Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g02223 ATGGGTTTTAGGAACAGTGCTGGTCCACAGAAGCATCAAGCAGTAGCACTAATGACAAGTTCTGATCAAGCAGTTTACTATAGGTGCCATATTGATGCATATCAGGATACTCTCTATGCTCATTCCAACCGTCAATTCTACAGAGAATGTAACATCTATGGCACGGTTGATTTCATCTTTGGCAATTCTGCAGTTGTGATCCAAAACTGTAATATTAGGCCAAAGTTACCAATGCATGGTCAGCAAAACACAATCACAGCTCAGGGAAAAACTGACCCTAACATGAACACTGGGATTTCCATTCAGAACTGCAACATTTCACCCTTTGGTAACTTGAGTTCTGTGGAGACATATCTTGGAAGACCCTGGAAGAATTACTCAACCACAGTGTACATGAAATCCAGAATGGAAGGTTTTGTGAACCCCAAAGGCTGGTTACCATGGACAGGGAACTCGGCTCCAGACACCATTTTCTATGCAGAATTTCAGAATGTTGGACCAGGTGCTTCAACAAAGAATAGGGTGAAGTGGAAGGGTTTGAGAACCATTACTAGTGAACAAGCCAGAAAGTTTACTATCAAAGGTTTTCTACAGGGAGATAAATGGATTTCTGCAGCAGGTGCCCCATTTAAGTCTGATCTATGA 645 0.4202 MGFRNSAGPQKHQAVALMTSSDQAVYYRCHIDAYQDTLYAHSNRQFYRECNIYGTVDFIFGNSAVVIQNCNIRPKLPMHGQQNTITAQGKTDPNMNTGISIQNCNISPFGNLSSVETYLGRPWKNYSTTVYMKSRMEGFVNPKGWLPWTGNSAPDTIFYAEFQNVGPGASTKNRVKWKGLRTITSEQARKFTIKGFLQGDKWISAAGAPFKSDL 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g02223 214 SUPERFAMILY Pectin lyase-like 2 211 IPR011050 -
Vimu4g02223 214 Gene3D - 1 214 IPR012334 -
Vimu4g02223 214 Pfam Pectinesterase 1 200 IPR000070 GO:0030599|GO:0042545
Vimu4g02223 214 PANTHER PECTINESTERASE 1 204 - -
Vimu4g02223 214 ProSitePatterns Pectinesterase signature 2. 52 61 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g02223 Vimu-Chr4 24349163 24349807 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g02223 1 214 Carbohydrate Esterase AT3G10710 67.757 3.52e-113 332
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g02223 - - gmx:100811152 434.876