Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g02222 ATGTCATCCCCACCATTTTTCCTTCTCTTTCTCTTCTTCCTCTCAGCTCCATTATTACTCTTAGCTCAATCTCCACCTTCTCCACCTTCTCTTTCTTCTTCTCCTTCTTCTTCTTTTGCCTGCAAAGGAACACTCTATCCAAAACTATGTCGTTCCATTCTCTCAGCCATCCGTGCCTCCCCTTCAGACCCTTACGGCTATGGCAAGTTCTCCATAAAGCAAAGCCTCAAACAGGCACGTAAACTCGCCAAGGTCTTTGACGACTTCCTCCATCGCCACCAATCATCTTCTTCCCTCAAACATGCAGAAGTTGCATCTCTAGGAGACTGCAAAGACCTCAACCAGCTCAACGTGGACTACTTAACGTCCATATCTGAAGAGCTCAAATCTGTAAGTTCTTCGGATACCGAGATGGTTGAGAAAATCGAAAGCTATCTCAGTGCTGTTGCCACCAACCACTACACATGCTATGATGGCTTGGTGGTTACCAAAAGCAACATTGCCAACGCCCTTGCTGTGCCACTGAAGGATGTGACCCAGTTCTACAGTGTCTCACTTGGGTTGGTCACCGAGGCTCTCGACAAGAACCTCAGAAGAAACAAGACACGCAAACATGGACTACCCACCAGAACCTTCAAGGTCAGGCAACCACTGGAGAAGCTCATCAAGCTTCTTCGCACAAAGTATAGTTGCACCAAGTTATCCAATTGCAGCAGAGCTGGAAGGAATCTTAAGGAAAGTGGAAGCCAAGGAATTTTATTACAGGATTTTGTGATTGTGAGTTCTTATGGAATGGACAACTATACTTCCATTGGAGAGGCTATTGCTGCTGCACCCAATAACACAAAGCCTGAAGATGGATATTTCCTGGTGTATGTTAGAGAGGGAATCTATGAGGAATATGTGGTAATTCCCAGAGAAAAGAAGAACATATTGCTTGTTGGAGATGGTATTAACAAGACTATCATCACAGGGAACCACAGTGTCATAGATGGTTGGACAACTTTCAATTCTTCCACATTTGGTAAGTCCTTTATTCTTTCTAGTTCTTCTCATTTGCAAGGACTAGTTTTTACTTGTCCTAATAACAAGTCAATGGATGTTACATTCAGAAACACAGCTGGACCAGAAAAACACCAAGCAGTGGCAGTGAGGAACAATGCTGACCTCTCTACATTCTACCGTTGCAGTTTTGAAGGATATCAAGACACTCTCTATGTTCACTCTCTGAGGCAATTCTACAGGGAATGTGAAATCTATGGCACTGTGGACTTCATTTTTGGCAACGCAGCCGTGGTGTTCCAACAGAGTAAGATCTATGCCAGAAAACCATTGCCAAACCAGAAGAATGCTGTGACAGCACAAGGAAGAACTGATCCTTTTCAGACCACTGGCATTTCAATCCAAAACTGCACCATTGATGCCGCACCAGACTTAGCCGCGGACTTGAATTCCACAGCAAGTTACTTAGGCCGGCCATGGAAGTTGTATTCAAGGACTGTTTACCTGCAATCATACATTGGAAACGTTATTCAACCTGCAGGGTGGTTAGAGTGGAATGGCACAGTTGGTTTAGACACCCTCTTTTATGGTGAGTTTAACAACTATGGTCCTGGTTCTAACACTAGCAATAGAGTACAATGGCCTGGTTACTTTCTGTTGAATGCTACTCAAGCTTGGAACTTCACAGTCCTGAACTTTACGTTGGGAAATACTTGGCTTCCTGACACAGATATACCTTACACCGAAGGACTGTTAAGATAA 1764 0.4405 MSSPPFFLLFLFFLSAPLLLLAQSPPSPPSLSSSPSSSFACKGTLYPKLCRSILSAIRASPSDPYGYGKFSIKQSLKQARKLAKVFDDFLHRHQSSSSLKHAEVASLGDCKDLNQLNVDYLTSISEELKSVSSSDTEMVEKIESYLSAVATNHYTCYDGLVVTKSNIANALAVPLKDVTQFYSVSLGLVTEALDKNLRRNKTRKHGLPTRTFKVRQPLEKLIKLLRTKYSCTKLSNCSRAGRNLKESGSQGILLQDFVIVSSYGMDNYTSIGEAIAAAPNNTKPEDGYFLVYVREGIYEEYVVIPREKKNILLVGDGINKTIITGNHSVIDGWTTFNSSTFGKSFILSSSSHLQGLVFTCPNNKSMDVTFRNTAGPEKHQAVAVRNNADLSTFYRCSFEGYQDTLYVHSLRQFYRECEIYGTVDFIFGNAAVVFQQSKIYARKPLPNQKNAVTAQGRTDPFQTTGISIQNCTIDAAPDLAADLNSTASYLGRPWKLYSRTVYLQSYIGNVIQPAGWLEWNGTVGLDTLFYGEFNNYGPGSNTSNRVQWPGYFLLNATQAWNFTVLNFTLGNTWLPDTDIPYTEGLLR 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g02222 587 PANTHER PECTINESTERASE 23 575 - -
Vimu4g02222 587 Pfam Pectinesterase 258 570 IPR000070 GO:0030599|GO:0042545
Vimu4g02222 587 SUPERFAMILY Pectin lyase-like 256 584 IPR011050 -
Vimu4g02222 587 Gene3D - 256 587 IPR012334 -
Vimu4g02222 587 NCBIfam pectinesterase inhibitor domain 11 190 IPR006501 GO:0004857
Vimu4g02222 587 FunFam Pectinesterase 253 585 - -
Vimu4g02222 587 CDD PMEI-like_3 40 191 - -
Vimu4g02222 587 Pfam Plant invertase/pectin methylesterase inhibitor 40 187 IPR006501 GO:0004857
Vimu4g02222 587 ProSitePatterns Pectinesterase signature 2. 419 428 IPR033131 -
Vimu4g02222 587 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 40 190 IPR035513 -
Vimu4g02222 587 SMART PMEI_2 32 188 IPR006501 GO:0004857
Vimu4g02222 587 Gene3D Invertase/pectin methylesterase inhibitor family protein 38 191 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g02222 Vimu-Chr4 24344313 24348526 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g02222 40 586 Carbohydrate Esterase AT3G10720 58.169 0.0 672
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g02222 K01051 - gmx:100816503 982.245