Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g02220 ATGGATATAGATCTCCGGTTACCTTCTGGTGAACATGATAAGGAGGATGAAGAAACAACTACAATTGATAACATGCTGGACAGTGATGAAAAATTGCATAATGGAGGTATAGATGGCAGAAATATAGTTGATGCTGGTATTGAGGTACATGCTCTAAATGGTGGAGATTTGAATTCACCCACAGTTGATATTGTAATGTTTAAGGAAGACACAAATCTAGAGCCACTTTCTGGCATGGAATTTGAGTCTCATGGGGAAGCTTATTCTTTTTACCAAGAATATGCTCGGTCAATGGGATTCAACACTGCAATACAAAATAGTCGTCGTTCAAAAACATCAAGAGAATTTATAGATGCGAAGTTTGCTTGCTCTAGATATGGAACAAAACGAGAGTATGACAAATCATTTAATCGACCACGTGCTCGACAGAACAAACAAGATTCTGAAAATTCAACAGGTCGAAGATCTTGCTCTAAAACCGATTGTAAAGCAAGCATGCATGTAAAAAGAAGGTCAGATGGAAAATGGGTTATACATAGCTTTGTGAAAGAGCATAATCATGAGCTTTTACCAGCCCAAGCAGTTAGTGAACAAACAAGAAGAATGTATGCTGCAATGGCTAGGCAGTTTGCTGAATACAAAACTGTGGTTGGTCTCAAGAATGAGAAGAATCCATTTGATAAAGGTCGGAATTTGGGCCTAGAGTCAGGGGAGGCTAAACTCATGCTTGATTTTTTCATACAGATGCAAAATATGAATTCTAACTTCTTTTATGCAGTAGATCTTGGTGAAGATCAACGTCTGAAAAATCTTTTATGGATTGATGCTAAAAGTAGGCATGACTATATCAACTTTTGTGATGTAGTGTCATTTGACACCACGTATGTTAGAAACAAATATAAAATGCCTCTTGCACTTTTTGTTGGAGTGAACCAGCACTACCAATTTACATTACTTGGATGTGCCTTGATATCAGATGAAAGTGCTGCCACTTTTTCTTGGCTATTTCGGACATGGCTGAAAGGAGTTGGTGGTCAAGTTCCAAAAGTGATCATTACTGACCATGACAAGACATTGAAGTCAGTTATTTCAGACATCTTTCCTAATTCTAGTCATTGTGTTTGCCTATGGCATGTATTAGGGAAGGTATCAGAAAATTTAGCTCCTGTAATTAAAAAGCATGAGAATTTTATGGCAAAATTTGAAAAATGCATTTATCGGTCCTTGACCAGTGATGATTTTGAGAGGAGATGGTGGAAAATTGTTGATAAGTGTGAACTTCGAGAGGATGAATGCATGCAGTCATTGTATGAAGATCGAAAGTTATGGGCGCCAACATTCATGAAAGATGTTTTCTTAGGTGGTATGTCTACTGTCCAGCGATCTGAAAGTGTAAATTCCTTCTTTGACAAATATGTTCATAAGAAGACCTCTGTCCAAGACTTTGTCAAACAGTATGAATCAATCTTGCAAGACAGGTATGAAGAGGAAGCAAAAGCAGATTCTGATACTTGGAATAAATTGGCAACTTTAAAAACTCCTTCACCTTTGGAGAAGAGTGTTGCAGGGACTTTCACTCATGCTGTATTCAAGAAAATTCAAGCTGAGGTTGTAGGTGCAGTTGCCTGTCATCCTAAAGCTGACAGGCAGGATGATACAACCACAGTTCACAGGGTTCATGACATGGAAACAAGTAAAGACTTTTTTGTTGTGGTGAATCAAGTGAAGTTCGAGTTGTCTTGTATATGTAGGTTATTTGAATACAGAGGTTATCTTTGTAGACATGCATTGATTGTTCTTCAATATTCTGGACAGTCAGTGTTCCCGCCTCAATATATTTTGAAACGGTGGACAAAAGATGCAAAGCTCAGGAATATAATTGGAGAAGAATCTGAACACATGCTAACTAGGGTGCAACGGTACAATGATTTATGTCAGCGAGCACTGAAGCTTAGTGAAGAGGGATCATTGTCCCAAGAGAGTTATAGTATTGCATTCCATGCACTACATGAAGCACACAAAAATTGTGTGAGTGTTAACAATTCTAGTAAGAGTCCTACAGAAGCTGGTACATCAGGGGCTCATGGTCAACTTTCCACTGAAGAAGATACGCAAAGTAGAAATATAGGCAAGCCAAACAAAAAGAAGAATCCAACTAAAAAGAAAAAGGTGAACTCTGAAGCAGAAGTGATGACAGTTGGTGCCCTAGACAACTTGCAACAAATGGAAAAATTCAGCACAAGAGCAGCAGTAACCCTTGAAGGTTATTATGGTACACAACAGAGCGTGCAAGGAATGTTGAACTTAATGGGACCAACTCGTGATGATTACTATGGGAATCAACAGACTCTTCAGGGGCTGGGACCAATAAGTTCAATACCAACCAGTCACGATGGTTACTATGGTGCACATCAGGGCATTTCTGGTCTGGCACAACTAGATTTTTTGCGAACTGGCTTCACATATAGCATTCGGGTTAGTATGGATGATCCTAACGTGAGAGCAACACAGTTGCATGAGGATCCATCAAGACATGCATGA 2541 0.3896 MDIDLRLPSGEHDKEDEETTTIDNMLDSDEKLHNGGIDGRNIVDAGIEVHALNGGDLNSPTVDIVMFKEDTNLEPLSGMEFESHGEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSFNRPRARQNKQDSENSTGRRSCSKTDCKASMHVKRRSDGKWVIHSFVKEHNHELLPAQAVSEQTRRMYAAMARQFAEYKTVVGLKNEKNPFDKGRNLGLESGEAKLMLDFFIQMQNMNSNFFYAVDLGEDQRLKNLLWIDAKSRHDYINFCDVVSFDTTYVRNKYKMPLALFVGVNQHYQFTLLGCALISDESAATFSWLFRTWLKGVGGQVPKVIITDHDKTLKSVISDIFPNSSHCVCLWHVLGKVSENLAPVIKKHENFMAKFEKCIYRSLTSDDFERRWWKIVDKCELREDECMQSLYEDRKLWAPTFMKDVFLGGMSTVQRSESVNSFFDKYVHKKTSVQDFVKQYESILQDRYEEEAKADSDTWNKLATLKTPSPLEKSVAGTFTHAVFKKIQAEVVGAVACHPKADRQDDTTTVHRVHDMETSKDFFVVVNQVKFELSCICRLFEYRGYLCRHALIVLQYSGQSVFPPQYILKRWTKDAKLRNIIGEESEHMLTRVQRYNDLCQRALKLSEEGSLSQESYSIAFHALHEAHKNCVSVNNSSKSPTEAGTSGAHGQLSTEEDTQSRNIGKPNKKKNPTKKKKVNSEAEVMTVGALDNLQQMEKFSTRAAVTLEGYYGTQQSVQGMLNLMGPTRDDYYGNQQTLQGLGPISSIPTSHDGYYGAHQGISGLAQLDFLRTGFTYSIRVSMDDPNVRATQLHEDPSRHA 846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g02220 846 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 69 677 IPR031052 GO:0006355
Vimu4g02220 846 MobiDBLite consensus disorder prediction 132 164 - -
Vimu4g02220 846 Pfam SWIM zinc finger 576 602 IPR007527 GO:0008270
Vimu4g02220 846 Pfam MULE transposase domain 288 380 IPR018289 -
Vimu4g02220 846 MobiDBLite consensus disorder prediction 677 726 - -
Vimu4g02220 846 Pfam FAR1 DNA-binding domain 89 191 IPR004330 -
Vimu4g02220 846 ProSiteProfiles Zinc finger SWIM-type profile. 568 604 IPR007527 GO:0008270
Vimu4g02220 846 SMART 26again6 579 606 IPR006564 GO:0008270
Vimu4g02220 846 MobiDBLite consensus disorder prediction 677 706 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g02220 Vimu-Chr4 24323885 24327019 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vimu4g02220 FAR1 2.3e-27 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g02220 - - gmx:100817034 1630.15