Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g02216 ATGGGTTCGCTTGAAACCCCAACCGGCGGGGAAAACGGTTCCGCTCCTTCCGCCGGCAAAGGCAAATCCATGTCCGTCGACGGCGCGGAGGCGGCGCCGGAGCCCGAAATGTCGAAGCGGAGGAGATCGTCGGTTCTCCCCCTGGAGGTCGGCACGCGTGTCATGTGCCGGTGGAGGGACAGCAAGTACCATCCCGTTAAGGTCATCGAACGCCGGAAGGTTCACAACGCCATCCCCAGCGATTACGAGTATTACGTCCATTACACCGAGTGTAGGATCCTTCGTCCTTCGACCTTCCTTCTGTTTCTCCATTTGAATGAATAG 324 0.5833 MGSLETPTGGENGSAPSAGKGKSMSVDGAEAAPEPEMSKRRRSSVLPLEVGTRVMCRWRDSKYHPVKVIERRKVHNAIPSDYEYYVHYTECRILRPSTFLLFLHLNE 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g02216 107 Gene3D - 26 92 - -
Vimu4g02216 107 Pfam RNA binding activity-knot of a chromodomain 48 90 IPR025995 -
Vimu4g02216 107 MobiDBLite consensus disorder prediction 1 44 - -
Vimu4g02216 107 SUPERFAMILY Chromo domain-like 44 90 IPR016197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g02216 Vimu-Chr4 24308476 24308799 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g02216 4 90 C2H2 Transcription Factor Family AT5G64610 56.667 1.21e-27 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g02216 K11308 - gmx:100819168 164.081