Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g02215 ATGGTTTCGGCTTCGAGGAACGAAAAGTTCCGAGTTGAAGAGAAAGGAATCACTTTTGCGCGCGTGTGGTTTTTATCCCAATCGTGGGTGAGCAAGGAAACCATAACTGTCAATAGAAGGCTTGACGAGTGGGTTAAGCTTGAACAGCTTGATCTTGATTCAGTGGAGGCGGTTGTCGATGAGAAAGTGGAGGAGAAGGGCGCAACTGGTTTGAAGATGACACGCCACCAAAAGAGGAAGATTGATGAGACACATGTAGAGGGTCACGAGGAGCTTGATGCTGCTAGTTTACGAGAACATGAGGAATTTACAAAAGTGAAAAATATAGCTACTATTGAGCTTGGAAGATATGAGATCGAGACATGGTACTTCTCCCCATTCCCTCCAGAATACAATGACTGTTTGAGGCTGTACTTTTGCGAGTTTTGCCTCAATTTCATGAAGCGCAAAGAACAGCTTCAGAGGCATATGAGGAAATGCGATCTGAAGCATCCTCCTGGTGATGAGATATATAGAAGTGGCACACTGTCAATGTTTGAGGTTGATGGAAAGAAGAACAAGGTTTATGGGCAGAATCTTTGTTACTTGGCCAAGTTATTTCTTGATCACAAGACACTCTATTATGACGTAGATCTGTTTCTGTTTTATGTTTTGTGTGAATGTGATGATCGAGGTTGTCACATGGTTGGCTATTTTTCGAAGGAAAAACATTCCGAGGAATCTTACAATTTGGCATGTATCCTCACCCTTCCACCTTACCAAAGGAAAGGCTATGGCAAATTTCTAATTGCTTTCTCATATGAACTGTCGAAGAAGGAGAGCAAAGTTGGGACACCTGAAAGACCCCTATCAGATCTTGGACTGCTAAGCTACAGAGGATATTGGACCAGGGTTCTCTTGGACATTCTGAAGAAGCACAAGGGGAACATTTCTATCAAGGAACTGAGTGATATGACTGCCATTAAAGCTGAAGATATATTAACAACCCTGCAGAGTCTAGAGTTGATTCAATACAGAAAAGGTCAACATGTGATCTGTGCTGATCCCAAAGTGTTGGATCGTCATCTTAAAGCTGCTGGAAGGGGTGGCCTGGATGTTGATGTTAGCAAATTGATCTGGACTCCTTATAAAGAACAGAGTTGA 1143 0.4261 MVSASRNEKFRVEEKGITFARVWFLSQSWVSKETITVNRRLDEWVKLEQLDLDSVEAVVDEKVEEKGATGLKMTRHQKRKIDETHVEGHEELDAASLREHEEFTKVKNIATIELGRYEIETWYFSPFPPEYNDCLRLYFCEFCLNFMKRKEQLQRHMRKCDLKHPPGDEIYRSGTLSMFEVDGKKNKVYGQNLCYLAKLFLDHKTLYYDVDLFLFYVLCECDDRGCHMVGYFSKEKHSEESYNLACILTLPPYQRKGYGKFLIAFSYELSKKESKVGTPERPLSDLGLLSYRGYWTRVLLDILKKHKGNISIKELSDMTAIKAEDILTTLQSLELIQYRKGQHVICADPKVLDRHLKAAGRGGLDVDVSKLIWTPYKEQS 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g02215 380 PANTHER HISTONE ACETYLTRANSFERASE 35 376 - -
Vimu4g02215 380 Pfam MOZ/SAS family 165 342 IPR002717 GO:0004402|GO:0006355|GO:0016573
Vimu4g02215 380 FunFam Histone acetyltransferase 283 362 - -
Vimu4g02215 380 SUPERFAMILY Chromo domain-like 37 105 IPR016197 -
Vimu4g02215 380 Gene3D - 35 104 - -
Vimu4g02215 380 Gene3D - 105 161 - -
Vimu4g02215 380 Pfam MYST family zinc finger domain 106 160 IPR040706 -
Vimu4g02215 380 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 105 376 IPR016181 -
Vimu4g02215 380 FunFam Histone acetyltransferase 163 291 - -
Vimu4g02215 380 FunFam Histone acetyltransferase 103 160 - -
Vimu4g02215 380 Gene3D - 283 363 IPR036388 -
Vimu4g02215 380 Gene3D - 163 375 - -
Vimu4g02215 380 ProSiteProfiles MYST-type histone acetyltransferase (HAT) domain profile. 104 375 IPR002717 GO:0004402|GO:0006355|GO:0016573
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g02215 Vimu-Chr4 24303192 24308464 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g02215 38 380 C2H2 Transcription Factor Family AT5G64610 93.586 0.0 678
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g02215 K11308 - gmx:100819116 694.886