Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g02213 ATGGCTGAAGTCATCAACATGCCCCCCGAATCTCTCGATCAATCTCCCTCTGCTTCCGCTCCTCCTCAACCCCCTCCACCAGCCACTTCCGCCGCCGAAGATGACCCCCCTCCGCCGCGCCGCCGAGACCGCCGCGACGATCGGGAATTAGACCGCCACCCCAACCGTAGCCGCGATTACTACGACCGCGACAGGGACTTCAAGCGCCGCCGTAGCCCCAGCCCTGGCTACCGCGACCGCCGCTACTCTCCACAGCCGCCATCGCGTCGCTCACCTCCGCCGTACAAGCGGTCTCGGAGGGGCAGCCCCCGTGGTTATGGAACTGAGGACAGATTTGGGTATGAGTATTTTGGTGGCTATGAACGGGGAGTGGGTGGAAGAACTGGTTATGCGGATGAGAAGTCTTATGGCAGGCTGGCACATCGATCTGTTGGGGGATATCATAATGGGATGTCTGATGTGGATATTAATCGTGGTTATACAGATTTGTCAAGTGGAGGTGCACAAAGAGAGGGGTTGATGTCCTATAAACAATTCATTCAGGAGCTTGAAGATGATGTACTGCCAGCTGAAGCTGAGCGTAGGTATCAAGAATACAAATCGGAGTATATTTCTACCCAAAAACGAGCTTATTTTAATGCTCATAAGGATGAGGAATGGTTAAAAGATAAGTATCATCCAACAAATTTACTAACAGTAATTGAAAGGAGGAATGAAAATGCTCGACGACTTGCGAAGGATTTTTTTCTTGACTTGCAGAGTGGAACGTTAGACCTAAATCCTGGTTTGAATTCCTCTTCGTCCAGTAAATCAGGGCATGCCAGTGAACCTAATTCAGAGGAAGAAACAGATGGTGGCATTAAGCGAAGAAGACATGGTAGGGGACCTAATAAAGATAATGATTTCTCCGCTGCACCCAAGGCTCACCCTATCAGTTCTGAACCTAGACGGATACAAGCAGATATTTTAAAAGCTCAGGCTGTTGTTCGTAAGCTTGACATGGAGAAGGGTATTGAAGACAATATCTTATGTACTAGTGACCACAACAGAAATGGTGAGAAGTCTCACAGTGGGTCTGTGGGCCCCATAATAATAATCCGAGGCTTAACATCTGTTAAGGGCTTAGAGGGTGTTGAGCTATTGGACACACTTATTACATATCTTTGGCGCATTCATGGTATTGATTATTATGGAATGGTTGAGATTAATGAGGCCAAGGGTTTTAGACATGTGAGACCAGAAGGAGCGGGGCATGAAGAAACAAGTAAATCAGGTTCCGAATGGGAGAAAAAACTTGATTCATTTTGGCAGGACAGGTTGAATGGTCAGGATCCATTGGAATTGATGACTGCCAAGGAGAAGATAGATGCTGCTGCAGCTGATGTGTTGGATCCATATGTTAGAAAAATTAGGGATGAGAAATATGGGTGGAAGTATGGTTGTGGAGCTAAGGGCTGCACAAAGCTTTTTCATGCGGCTGAATTTGTGTACAAACATTTGAAGCTAAAACATCCCGAGCTTGTAATGGAACTGACATCAAAATTGCGTGAGGATCTTTATTTTCAAAATTACATGAATGATCCTGATGCTCCTGGTGGAACACCTGTCATGCAGCAACCTCAGAAGGATAGGTCTATAAAGCGAAGATTAGGAGGTTTGGAGGGCCGATTGAAGGATGACCGTGGTAACAGGCGAGACCAGGACACGAATGACAAAATGAATGGAGATAATAGTTCCCCATCCAATGAAAGGCAAATGGGAAACCATGATGAAGCAATGTATGATTACGGAGGGCCTGGTGTACCTCCATTTACCTCAGATATGCCCCCTCCTCCGCCAGTTTTGATGCCTGTACCTGGTGCAGGGCCTTTGGGACCCTTTGTCCCTGCTCCACCAGAAGTTGCAATGCAAATGTTAAGGGAGCAAGGAGGACCGTCGTATGATGCCTCAGGAAGGAAGATGCGATCTGGTCCTCATATAGGTGGACCAGGGCCTATAATTGCTGTCCCTCCATCCTTTAGACCAGATCCTCGACGGATGCGAAGGTAA 2049 0.4749 MAEVINMPPESLDQSPSASAPPQPPPPATSAAEDDPPPPRRRDRRDDRELDRHPNRSRDYYDRDRDFKRRRSPSPGYRDRRYSPQPPSRRSPPPYKRSRRGSPRGYGTEDRFGYEYFGGYERGVGGRTGYADEKSYGRLAHRSVGGYHNGMSDVDINRGYTDLSSGGAQREGLMSYKQFIQELEDDVLPAEAERRYQEYKSEYISTQKRAYFNAHKDEEWLKDKYHPTNLLTVIERRNENARRLAKDFFLDLQSGTLDLNPGLNSSSSSKSGHASEPNSEEETDGGIKRRRHGRGPNKDNDFSAAPKAHPISSEPRRIQADILKAQAVVRKLDMEKGIEDNILCTSDHNRNGEKSHSGSVGPIIIIRGLTSVKGLEGVELLDTLITYLWRIHGIDYYGMVEINEAKGFRHVRPEGAGHEETSKSGSEWEKKLDSFWQDRLNGQDPLELMTAKEKIDAAAADVLDPYVRKIRDEKYGWKYGCGAKGCTKLFHAAEFVYKHLKLKHPELVMELTSKLREDLYFQNYMNDPDAPGGTPVMQQPQKDRSIKRRLGGLEGRLKDDRGNRRDQDTNDKMNGDNSSPSNERQMGNHDEAMYDYGGPGVPPFTSDMPPPPPVLMPVPGAGPLGPFVPAPPEVAMQMLREQGGPSYDASGRKMRSGPHIGGPGPIIAVPPSFRPDPRRMRR 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g02213 682 MobiDBLite consensus disorder prediction 35 77 - -
Vimu4g02213 682 MobiDBLite consensus disorder prediction 526 593 - -
Vimu4g02213 682 ProSitePatterns Zinc finger C2H2 type domain signature. 481 504 IPR013087 -
Vimu4g02213 682 MobiDBLite consensus disorder prediction 542 572 - -
Vimu4g02213 682 Pfam SERRATE/Ars2, N-terminal domain 177 259 IPR021933 -
Vimu4g02213 682 MobiDBLite consensus disorder prediction 259 274 - -
Vimu4g02213 682 MobiDBLite consensus disorder prediction 259 316 - -
Vimu4g02213 682 MobiDBLite consensus disorder prediction 18 34 - -
Vimu4g02213 682 Pfam Arsenite-resistance protein 2 420 595 IPR007042 -
Vimu4g02213 682 MobiDBLite consensus disorder prediction 643 682 - -
Vimu4g02213 682 MobiDBLite consensus disorder prediction 275 298 - -
Vimu4g02213 682 PANTHER ARSENITE-RESISTANCE PROTEIN 2 40 681 IPR039727 GO:0006397
Vimu4g02213 682 MobiDBLite consensus disorder prediction 1 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g02213 Vimu-Chr4 24290513 24297668 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g02213 77 681 C2H2 Transcription Factor Family AT2G27100 61.321 0.0 690
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g02213 K27103 - gmx:100817569 1084.71