Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g02207 ATGGAAGGAGGGACAAGGCAGAACTCAGTTCCTCTTCATGGTTCCATTGATAAGTCTAGGATTCTGGATGTTAAACCTCTGAAGAGTTTGATTCCTTTTTTCTCTATGTCTTCTCAAGCTCCACCTCCTGGCCAGTATCCTACTGGGTTTTCACCATTTTTCCCCTTTGGTGCACCTCGACAAACTCCAACTGAGGTGACACCAAATGCTGCTTCCATACCTACTCCAATAAGGGTATATAGCAGTCCACCAGGGGCAGGAGACTCCAGTTCAACAATGGAGGGGTTCAGTGATCAACGTACTTCTGGGAAGAAAAAACGTAGATCACCAAAGTCGAGCAGCGCCAAATCATCCTTAGCTAAGCCTAAGAAAACTCAAGAGCCCCCTGTTGATTTAGGTGTTTTAGTTGGTATTACCCCTGCTCAAAAAGAAGATGGTAGCCGTGAAGTGGTTAATTTTGTGCTCATGGCGTTTGATGCTCTTAGAAGAAGGCTCTGCCAACTTGAAGGGGCCAAGAAATTGAGCTTGGGTCCGATCAAGCGTGCAGATTTGAAAGCCTGCAATACTTTGATGACCAAAGGAATCCGGACAAACATGAGGAAGAGAATAGGATCAGCTCCTGGGGTTGAGATTGGTGACATTTTCTTTTTCAGAGCAGAAATGTGTGTTGTGGGTTTGCATGCTCACTTCATGGGTGGAATTGATGCCTTGCATATTAGGGGTGAGTTTGAGGAGGAAACTTTGGCTGTGAGCATTGTTTCATCAGGAGAATATGATGATGATGCTGAGGATATTGATGTTATAACGTATACTGGTCAGGGAGGGAACTTCTTCAAGAAAGATAAGCACGCCATTGACCAGAAGCTTAAAAGGGGTAATCTTGCTATGGATAGGAGTTCACGACAACTCAATGAAATAAGAGTCATCCGGGGGATTAGGGATGATGTGAATCCAAATTTAAAAGTCTATGTCTATGATGGTTTGTATAAAATTCAGGATTCATGGATTGGAAAAGCAAAAGGTGGTGGTGATGTATTTAAGTATAAGTTGGTTAGAATGCCTGGACAACCTAGTGCCTATTCTGTTTGGAAATCAGTTCAGAAGTGGAAATCTGGCACTTCAAGGATTGGACTTATTCTTGCAGACATTTCCAATGGAGCTGAGAATATTCCTGTATCACTTGTCAATGAAGTTGATAATGTGAAGGCGCCTACTTATTTCAATTATTTCCATTCTCTTAGACACCCTAAATCATTCAGTTTGATGCAGCCTTCAAATGGGTGCACCTGTACTAAATCATGTGTCCCTGGTGATTCGAACTGCTCTTGCATTAGGAGAAATGAAGGTGATTTCCCTTATATTGGAAATGGTGTTCTGGTGAGCCGGATGCAATTGGTTCATGAATGTGGCCCTACATGTCAGTGTTTTCCTAACTGCAAAAATAGAGTATCCCAAACCGGTTTAAAGCACCCCATGGAAGTGTTCAAAACAAAGGATAGAGGGTGGGGTCTTCGGTCTCTGGATCCTATTCGCTCTGGTACCTTCATTTGTGAATATGCAGGAGAAGTTGTTGATAGGGCCAAAGTAAGTCAGCTTGTGAGGGAAGGAAATGAGTATGTTTTTGATACAACCCGGATTTATGGTCAATTCAAGTGGAATTATGAGCCTAGGCTTTTGGAAGAAGTCAATCCCAATGAATCTAGTGAGCATTATGCCATGCCGTATCCTTTGACCATAAGTGCCAAAAATTTTGGGAATGTGGCTAGATTCATGAATCATAGTTGCTCCCCAAATGTTTTTTGGCAGCCTGTGGTATATGAAGAAAACAACCAATCTTACGTCCATGTTGCCTTCTTTGCTCTCAGACACATTCCACCAATGACAGAGTTAACATATGACTATGGAGTTGCCCGATCTGATCATGCTGAGGGTATCCGTGCAGTCAAAGGGAGAAAGAAATGCTTATGCAGATCATCAAAATGCCGAGGTTCTTATGGTTAA 2001 0.4258 MEGGTRQNSVPLHGSIDKSRILDVKPLKSLIPFFSMSSQAPPPGQYPTGFSPFFPFGAPRQTPTEVTPNAASIPTPIRVYSSPPGAGDSSSTMEGFSDQRTSGKKKRRSPKSSSAKSSLAKPKKTQEPPVDLGVLVGITPAQKEDGSREVVNFVLMAFDALRRRLCQLEGAKKLSLGPIKRADLKACNTLMTKGIRTNMRKRIGSAPGVEIGDIFFFRAEMCVVGLHAHFMGGIDALHIRGEFEEETLAVSIVSSGEYDDDAEDIDVITYTGQGGNFFKKDKHAIDQKLKRGNLAMDRSSRQLNEIRVIRGIRDDVNPNLKVYVYDGLYKIQDSWIGKAKGGGDVFKYKLVRMPGQPSAYSVWKSVQKWKSGTSRIGLILADISNGAENIPVSLVNEVDNVKAPTYFNYFHSLRHPKSFSLMQPSNGCTCTKSCVPGDSNCSCIRRNEGDFPYIGNGVLVSRMQLVHECGPTCQCFPNCKNRVSQTGLKHPMEVFKTKDRGWGLRSLDPIRSGTFICEYAGEVVDRAKVSQLVREGNEYVFDTTRIYGQFKWNYEPRLLEEVNPNESSEHYAMPYPLTISAKNFGNVARFMNHSCSPNVFWQPVVYEENNQSYVHVAFFALRHIPPMTELTYDYGVARSDHAEGIRAVKGRKKCLCRSSKCRGSYG 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g02207 666 Gene3D SET domain 374 665 IPR046341 -
Vimu4g02207 666 ProSiteProfiles YDG domain profile. 204 352 IPR003105 -
Vimu4g02207 666 MobiDBLite consensus disorder prediction 36 128 - -
Vimu4g02207 666 Pfam SET domain 501 635 IPR001214 GO:0005515
Vimu4g02207 666 Pfam Pre-SET motif 383 482 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vimu4g02207 666 SMART preset_2 380 474 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vimu4g02207 666 MobiDBLite consensus disorder prediction 62 76 - -
Vimu4g02207 666 Pfam SAD/SRA domain 203 356 IPR003105 -
Vimu4g02207 666 ProSiteProfiles Post-SET domain profile. 650 666 IPR003616 -
Vimu4g02207 666 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 99 661 - -
Vimu4g02207 666 Gene3D - 186 373 IPR036987 -
Vimu4g02207 666 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 666 IPR025794 GO:0016571
Vimu4g02207 666 SUPERFAMILY SET domain 389 663 IPR046341 -
Vimu4g02207 666 ProSiteProfiles Pre-SET domain profile. 426 487 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vimu4g02207 666 ProSiteProfiles SET domain profile. 490 635 IPR001214 GO:0005515
Vimu4g02207 666 SMART G9a_1 199 356 IPR003105 -
Vimu4g02207 666 SMART set_7 490 641 IPR001214 GO:0005515
Vimu4g02207 666 FunFam Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5 187 371 - -
Vimu4g02207 666 SUPERFAMILY PUA domain-like 186 374 IPR015947 -
Vimu4g02207 666 MobiDBLite consensus disorder prediction 84 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g02207 Vimu-Chr4 24260775 24266478 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g02207 1 666 Su(var)3-9 homologs AT1G73100 50.508 0.0 677
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vimu4g02207 SAD_SRA 5.2e-45 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g02207 K24405 - gmx:100812173 1122.84