Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g02203 ATGGTTCAAATGACACATGAGATTGATGACAATGTGCATGGTGAGAATCAGACCGGGTCACGGTTGAATGGCGGTGGTATTGGAGGAGGTACTGTTCTGAAGAAAGGGCCATGGACAGCTGCTGAAGATGTTATTTTGGTGGACTATGTCAATACGCATGGAGAGGGGAATTGGAATGCTGTTCAGAAGTATTCAGGCCTTTCTCGTTGTGGAAAAAGCTGCAGATTGCGATGGGCCAATCACCTAAGGCCAAACTTAAAGAAAGGCGCATTTACTGCAGAAGAGGAGCAGATGATCGCTGAACTCCATGCCAAAATGGGAAACAAATGGGCACGCATGGCGGCACATTTGCCTGGTCGTACAGATAACGAAATAAAAAACTACTGGAACACCCGGATGAAGAGGCGTCAACGGGCTGGCTTGCCACTTTATCCTCCGGAAGTAGTACTGCAAGCATTTCAAGATAATAAGCATGACCAAGGTACTGCTGAAATCAGCGATGGAGATGGAGGCCACCAGGATTTCATGGAGAAAAGCAATTACGAGATGCATGATGCAATATATGACAGTCTGAAGGAAAATCACGGAATCTTACCTTTTGTGCCTCAGCTTCCTGATATTTCTGCTAATAGCATTCTGCCAAATGTTCTTGGTTCTCCTTCATACTGTAATTTCCTGCCATCGACATTACCTAACCATGATCATCTTCAAGAGTCATCCGTCTCCTTTATTGGTTCCAATGAATTGAACAGTAATGGGTTTTATCCATTTGACCACTTTAAGGATAATACTTCTGATAAGATTGCAGAATCATTTGGATTGCATTCTCCCCTTGATCATGGTGCCTCCTCATATGGCTCAATCTGTTACAGCCATTCGTTATCGAATGACAATTACTCTACTTCTAAGCTAGCTTCTGAGGCTGTGAAGTCAGAGCTCCCTTCACTCCAATATCCAGAAACTGAATTTGGTAGCTGGGGTACCTCTCCCCCGCCTCCATTGAATGATTCTACTGATGTTTTCATCCATTCTCCTCAACCACCTTATGCACTAGACTCAGGTTCTTCTTCATCACTCAATCGCTTCCTTAATGAATTTCTTTATCAGCAGGCGAAGACTCTTGGTTATTCAAATAATAATTGGCCTGAGAGTTCAAATTCATCCATTGCAACTCCCGTTGATGGAGCTGAGAGTTCAGCTTTGAATATGTACGAGACAGAGTGGGAGGATTATGCTGACCCTGTATCTCCCTTTGGTGCAACTTCAATCCTGAATGAGCATCCTGTTGTTGGCACCAGAGGAAAGCCATGGGATGGGTGGGAACCTTTTCAGACCTTTAGTGGCAACAATGTGAAATTGCAGTCAGTTGAACAGGTTTCGGCCCCTAAGAGTGAAAATCAATCCATGTCTCTGTTGAATATCAGTTGGCCAGATGTCTTGCTGGCCTCAGATTGGCACGAGCTGTATTCTGAGCACAATAGCATGAACCAAGCTGACATGATTGATGCTAGTGATAATTTCACGAGACAGTAA 1533 0.441 MVQMTHEIDDNVHGENQTGSRLNGGGIGGGTVLKKGPWTAAEDVILVDYVNTHGEGNWNAVQKYSGLSRCGKSCRLRWANHLRPNLKKGAFTAEEEQMIAELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRMKRRQRAGLPLYPPEVVLQAFQDNKHDQGTAEISDGDGGHQDFMEKSNYEMHDAIYDSLKENHGILPFVPQLPDISANSILPNVLGSPSYCNFLPSTLPNHDHLQESSVSFIGSNELNSNGFYPFDHFKDNTSDKIAESFGLHSPLDHGASSYGSICYSHSLSNDNYSTSKLASEAVKSELPSLQYPETEFGSWGTSPPPPLNDSTDVFIHSPQPPYALDSGSSSSLNRFLNEFLYQQAKTLGYSNNNWPESSNSSIATPVDGAESSALNMYETEWEDYADPVSPFGATSILNEHPVVGTRGKPWDGWEPFQTFSGNNVKLQSVEQVSAPKSENQSMSLLNISWPDVLLASDWHELYSEHNSMNQADMIDASDNFTRQ 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g02203 510 Gene3D - 34 87 - -
Vimu4g02203 510 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 5 497 - -
Vimu4g02203 510 SMART sant 87 135 IPR001005 -
Vimu4g02203 510 SMART sant 34 84 IPR001005 -
Vimu4g02203 510 FunFam MYB-related transcription factor 34 87 - -
Vimu4g02203 510 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 83 137 IPR017930 -
Vimu4g02203 510 FunFam Transcription factor GAMYB 90 136 - -
Vimu4g02203 510 Gene3D - 90 136 - -
Vimu4g02203 510 SUPERFAMILY Homeodomain-like 34 129 IPR009057 -
Vimu4g02203 510 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 33 82 IPR017930 -
Vimu4g02203 510 ProSiteProfiles Myb-like domain profile. 83 133 IPR001005 -
Vimu4g02203 510 Pfam Myb-like DNA-binding domain 35 82 IPR001005 -
Vimu4g02203 510 Pfam Myb-like DNA-binding domain 88 131 IPR001005 -
Vimu4g02203 510 ProSiteProfiles Myb-like domain profile. 30 82 IPR001005 -
Vimu4g02203 510 MobiDBLite consensus disorder prediction 1 25 - -
Vimu4g02203 510 CDD SANT 37 82 IPR001005 -
Vimu4g02203 510 CDD SANT 90 131 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g02203 Vimu-Chr4 24241346 24244436 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g02203 30 507 MYB Transcription Factor Family AT5G06100 39.634 4.05e-103 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu4g02203 Myb_DNA-binding 4.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g02203 K09422 - gmx:100805804 828.935