Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g02200 ATGTCTAATCCACAAAAACAAGTTAAACAAGGAAAACAGCACATGAGCTACCATGAAGCACACCAAAGGGCTGCAAAATCTGTTTGCTCTGTTTGCAATAACAGAAGACCACAGTTTGAAAGGAACAGAAAAAAAGAGTTCTCATATGCTGAGTTGTGTGCAGCCACACAAGGGTTTTCCCCTAAGAACTATCTGTCAGAAGGAGGCTTTGGTTGTGTCTATATAGGGGAGTTGTGTGGACAAAAGATTGCTGTCAAGAAACACATGTATGCTAACCAAAAGGGACAGAAGGAATTCAATTCTGAAGTTGATGTTCTCAGCAAAGCAATGCATGAGAATGTGGTCATGCTGTTAGGATCATGCTCAGAAGGGATTAATAGACTTCTTGTGTATGAATATGTCTGCAATGCTTCATTGGACCAACATTTATCTCAACATTCTCGTACACTTCTTGATTGGCCAGACAGGGTGAAAGTAGCTGATGGTGCTGCCAAAGGACTGCTATACCTGCATGAGAATAACATAATACACAGAGATCTGACGACAAACAACATTCTTCTTACACATGATTATGATGCATTGCTAGGCGATTTTGGTTTGGCTAGAACTGTGATTGAAGACTCCTCATACTCTACAGAATGTGTTGGGAATTCGGGTTATATGGCCCCAGAATATGCAGAATTTGGTAAAGTGTCAATTAAAACAGATGTGTATTCCTTTGGGGTGGTTCTACTGCAGTTAATAACTGGAATGAGGAGCATAGACAAACGACTTGGGGGTAGAAGTCTGGTGGAATGGGCAAAACCACTTTTAAAAGAGAGGAACTATGCACATTTAATTGATGAAAGAATCATTATATCTCATGATGTCCATCAACTATTTTGGATGGTTCGAATAGCTGAGAAATGTCTAAGCAGAGACCCTCAAAGGAGACTAAATATGATTCAGGTTGTTGAGGCTTTGACCGACATTGTGGAAGGCAGAGCTGTTAGGAAATTCAGCAGAATTTCTCTTAATCAGATTTGTGAGAAAAATATAAATGCGGAATAA 1050 0.3971 MSNPQKQVKQGKQHMSYHEAHQRAAKSVCSVCNNRRPQFERNRKKEFSYAELCAATQGFSPKNYLSEGGFGCVYIGELCGQKIAVKKHMYANQKGQKEFNSEVDVLSKAMHENVVMLLGSCSEGINRLLVYEYVCNASLDQHLSQHSRTLLDWPDRVKVADGAAKGLLYLHENNIIHRDLTTNNILLTHDYDALLGDFGLARTVIEDSSYSTECVGNSGYMAPEYAEFGKVSIKTDVYSFGVVLLQLITGMRSIDKRLGGRSLVEWAKPLLKERNYAHLIDERIIISHDVHQLFWMVRIAEKCLSRDPQRRLNMIQVVEALTDIVEGRAVRKFSRISLNQICEKNINAE 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g02200 349 ProSiteProfiles Protein kinase domain profile. 59 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g02200 349 Pfam Protein tyrosine and serine/threonine kinase 63 321 IPR001245 GO:0004672|GO:0006468
Vimu4g02200 349 Gene3D Phosphorylase Kinase; domain 1 29 133 - -
Vimu4g02200 349 FunFam Proline-rich receptor-like protein kinase PERK8 19 133 - -
Vimu4g02200 349 PANTHER OS01G0253100 PROTEIN 26 325 - -
Vimu4g02200 349 PIRSF ILK 5 337 - -
Vimu4g02200 349 Gene3D Transferase(Phosphotransferase) domain 1 135 343 - -
Vimu4g02200 349 ProSitePatterns Tyrosine protein kinases specific active-site signature. 175 187 IPR008266 GO:0004672|GO:0006468
Vimu4g02200 349 SUPERFAMILY Protein kinase-like (PK-like) 38 321 IPR011009 -
Vimu4g02200 349 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK1 isoform X1 134 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g02200 Vimu-Chr4 24221068 24223108 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g02200 42 343 Trihelix Transcription Factor Family AT5G38560 43.492 1.13e-79 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Vimu4g02200 PK_Tyr_Ser-Thr 1.9e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g02200 - - vun:114183900 482.256