Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g02199 AAAACGATGAGTGCAGAAACTCAGAGGGTAGTGGTGATCCAGGATGCATCAAGAGATGTTAGTTCAAAAGCTATCCTTGGAGCCCTGGAAAAGTTTTCAGTTAAAGCTGGAGATCAGCTTATAATTGTTGCTATCCTTGATTGGATTAGCAGTCCCATGGGTTACATGGTCAGAGTTGATTCCAGTTCAATGATGATTTCAACAAACCAGAAAATAATTGGAAAATGGCATACCAAAAAAAAGAAAGAATATCTCATGAACGAGAACATCAAGGAGATTTCCAGCTACTGTAAATTGAATGAGATTGGATTCCAAATTGAAGTGCTTGTAGGCCCTACTGCAGAGGTTGCCTCTACTGCTGCCAAGGATTTTCGGGCCACAAGTTTGATTTTATTTAGACAGATCCACAAAGATATGAAGTATTTCATGCGCCGGCATCCTTGTGGCATGTATAGGATAACAAGTGACAATTCAATTGAGAGGTTGAAAGATCCAAAATCAACATCCAGCACCAAATCACTTGCTGACAGGCAAGAAAATGTAAGCTATAAAGAAATGTTTCCAGGAAGTGAAGAGGAAGAACGTTCTCTTCAGATGTCCAGGTCTTCATCAAGTGATATGTTGACATCAACTGGAGCCTCAAGTCAGTGGAGTACAGAAGTCTCCAATTCTAGTTTTGGAAGCTTCCGGTATGGCCATCAACACCAAGAGGGAAATTTCTATTCAAATATAGAACAAGAAACAGCAGGGAACCGATCACTATTTCACATTTCAGAGAATGAAGAAATGAACCAATGGGAAGTAGATAAAAAAGAGAAACACGGTAGAAATAATGAAAAATCTCATATGGAGGAAGAATTTACAAATCCACTCTGTTCTGTGTGCAATAATCGACGACCAAAAGTTGGATTGCAGATAGATTTCACTTATGCAGAGCTCTTTGCTGCTACAAAAGGATTTTCTCCCAATAACTTTCTCTCAGAAGGAGGATTCGGATCTGTCTACAAAGGACTGCTGAATGGAATGAAGATTGCTGTTAAGCAACATAAAAATGCAGGTTTCCAAGGAGAGAAGGAGTTTAAGTCTGAAGTGAACTTACTTAGCAAAGCAAGACATGAGAATGTGGTAGTGCTGCTAGGTTCATGCTCAGAAGGAACTAATAGGCTTCTTGTGTATGAATATGTTTGCAATGGTTCACTTGACCAACATCTATCAGAACATTCTCGGTCACCTCTTAGTTGGGAAGATAGGATCAATATAGCAATTGGAGCTGCCAAAGGCTTACTATACTTACACAAGAATAAAATGATACACAGAGATGTGAGACCAAATAATATCCTTATAACACATGATCATCATCCATTGATAGGAGACTTTGGATTAGCAAGAAGTCAAAATGAAGACTCGATACACTCAACCGAAGTTGTTGGAACTTTGGGGTACTTGGCACCAGAATATGCAGAACATGGGAAAGTGTCTAGCAAAACAGATGTATACTCTTTTGGAGTGGTTCTACTGCAGCTAATAACAGGAATGAGAACTACAGATAAAAGACTTGGAGGAAGAAGTCTTGTGGGATGGGCAAGGCCACTTTTAAAAGAGAGGAACTATCCAGATTTAATTGATGAAAGGATCATTAAGGCTCATGATGTCCATCAACTATTTTGGATGGTTCGAATAGCTGAGAAATGTCTAAGCAGAGAGCCTCAAAGGAGACTAAATATGATTCAGGTTGTTGATGCTTTGACTGACATTGTGGAAGGCAGAACATGTGACAGCATCTTAAGAGATTACTCCCCAGCAAGGTCAGATTCGATTTATAGTGCATCAGACTCTGATGAATCTGAAGATGAAATGAAGGAATCCTTCAACTGCGAAGATGAATCACCAACTCACTGTTCAGAATTCATAGATAGTAATAGCACAAGTCAGATGATGCACATGAATTTAAGACAGCCACCATCTCCACCAATTCAGAGCGTCTCTCTAAGTAGCTCAAGCTCGAATAATTCTCATGATGCGTCAATTAGTGATGGTGAAGCAATAGAAATATCAAAATCCAACGAGAGTAGCTCAATTTTTAGATGCTAG 2091 0.3931 KTMSAETQRVVVIQDASRDVSSKAILGALEKFSVKAGDQLIIVAILDWISSPMGYMVRVDSSSMMISTNQKIIGKWHTKKKKEYLMNENIKEISSYCKLNEIGFQIEVLVGPTAEVASTAAKDFRATSLILFRQIHKDMKYFMRRHPCGMYRITSDNSIERLKDPKSTSSTKSLADRQENVSYKEMFPGSEEEERSLQMSRSSSSDMLTSTGASSQWSTEVSNSSFGSFRYGHQHQEGNFYSNIEQETAGNRSLFHISENEEMNQWEVDKKEKHGRNNEKSHMEEEFTNPLCSVCNNRRPKVGLQIDFTYAELFAATKGFSPNNFLSEGGFGSVYKGLLNGMKIAVKQHKNAGFQGEKEFKSEVNLLSKARHENVVVLLGSCSEGTNRLLVYEYVCNGSLDQHLSEHSRSPLSWEDRINIAIGAAKGLLYLHKNKMIHRDVRPNNILITHDHHPLIGDFGLARSQNEDSIHSTEVVGTLGYLAPEYAEHGKVSSKTDVYSFGVVLLQLITGMRTTDKRLGGRSLVGWARPLLKERNYPDLIDERIIKAHDVHQLFWMVRIAEKCLSREPQRRLNMIQVVDALTDIVEGRTCDSILRDYSPARSDSIYSASDSDESEDEMKESFNCEDESPTHCSEFIDSNSTSQMMHMNLRQPPSPPIQSVSLSSSSSNNSHDASISDGEAIEISKSNESSSIFRC 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g02199 696 PANTHER OS01G0253100 PROTEIN 203 586 - -
Vimu4g02199 696 MobiDBLite consensus disorder prediction 200 219 - -
Vimu4g02199 696 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK1 isoform X1 395 597 - -
Vimu4g02199 696 MobiDBLite consensus disorder prediction 604 632 - -
Vimu4g02199 696 Gene3D Transferase(Phosphotransferase) domain 1 395 597 - -
Vimu4g02199 696 Gene3D Phosphorylase Kinase; domain 1 278 394 - -
Vimu4g02199 696 Pfam Protein tyrosine and serine/threonine kinase 325 581 IPR001245 GO:0004672|GO:0006468
Vimu4g02199 696 MobiDBLite consensus disorder prediction 161 219 - -
Vimu4g02199 696 FunFam Proline-rich receptor-like protein kinase PERK8 282 394 - -
Vimu4g02199 696 SMART tyrkin_6 320 582 IPR020635 GO:0004713|GO:0006468
Vimu4g02199 696 ProSitePatterns Tyrosine protein kinases specific active-site signature. 436 448 IPR008266 GO:0004672|GO:0006468
Vimu4g02199 696 ProSiteProfiles Protein kinase domain profile. 320 586 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g02199 696 MobiDBLite consensus disorder prediction 646 696 - -
Vimu4g02199 696 SUPERFAMILY Protein kinase-like (PK-like) 306 603 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g02199 Vimu-Chr4 24212119 24217274 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g02199 308 638 Trihelix Transcription Factor Family AT5G38560 42.151 8.58e-78 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Vimu4g02199 PK_Tyr_Ser-Thr 5.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g02199 - - gmx:100794450 1046.96