Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g02196 ATGAGTGAGCAAAAGATGGGGTTTGACCCATTGAATTGGTACTGCCAGCCAGCAGAAAACAGCGTTTGGGATAAAGCAGTGGACAGTGTTTTTGGACCCTATACACCTTGTGCAATCAACACTCTTGTTATCTCCATTTCAAATTTGGTTCTTATTGGCCTGTGCTTGTATCGGATATGGCTTATCATTTGCAATGCAAAGGTCGAGAGGTTTTGTTTGAGATCAAATTACTATAATTATCTTCTGGGAATGTTGGCTGCTTATTGTTCTGCTCAACCTTTGTTGAGATTGTTAACTGGAAATTCAGCTTTCAACCTCAGTGGTGAAACCGGCTTCGCTCCTTTTGAGATAGCGGCACTGGTTGTTGAAACACTTACTTGGAGCTCAATGATAGCTCTCATCCTCTTGGAAACAAAGGTTTATATCAGAAAATTTAGATGGTTGGTGCGTTGTGGAGTTATATATGTTTTGGTGGGAGATATTGTAGTGCTTAACCTTCTTCTATCAGTGAAAGATTACTGCAGCAGATCTGCTCTGTTTCTGTACATTAGCAGTGTCATCTGCCAGGTGTTGTTTGGTGCCTTACTTTTTGTTTACATTCCTGATTTGATTCCTTATTCTGGTCATTCAACAATGCAAACTGATGTACCCGACCATGGTGAATACGAACCTCTTTGTGGAGAAGATCAAGTTTGCCCTGAGAGGCAAGCCAATGTATTCTCCAGAATATGTTTTGGATGGATAACTCCACTCATGAAGCAAGGCTACAGAAAACCCGTAACTGAAAAGGATGTTTGGAAGCTAGACAAATGGGATGAAACAGAGACATTAACTGAGAAGTTTTGGATGGGAGGCTTCTTTAAGATTGGTAATGATCTTTCTCAGTTTGTGGGACCTATTTTGCTGAATCACCTATTAGATTCAATGCAAAGAGGAGATCCATCCTGGATTGGTTACATCTACGCCTTCTCTATATTTGTTGGAGTGACAGCTGGTGTTCTTTCTGAAGCACAGTATTTTCAGAATGTTATGCGGGTTGGTTTTCGGCTTAGATCAACTTTGGTGGCTGCTATATTTAGAAAATCCTTAAGGCTAACTAATGATGGTCGAAAGAAGTGCACATCTGGGAAGCTTATGAATATGATAACAACAGATGCCAATGCATTGCAGCAAATATGTCAACAACTTCATGGACTATGGTCAGCACCATTCCGTATCACTGTAGCTATGGTTCTCCTATACCAGCAACTGGGGGTTGCTTCACTTACATTTGTGATTAGCAAGATGCGAAAACTGACAAAGGAAGGACTGCAACAGACAGACAAAAGGGTTGGTCTGATGAATGAAATTCTTGCTGCCATGGATACTGTAAAATGTTATGCATGGGAAACAAGCTTCCAGTCCAGAATTCTAAGCATACGAGATGACGAGCTATCGTGGTTCCGCAAAGCCCAGCTGCTATATGCTCTAAATTCTTTTATACTAAACAGCATCCCTGTTCTTGTGACGGTGACCACATTCGGAATTTTCACTTTACTGGGTGGAGAATTGACACCTGCAAGGGCATTTACCTCATTATCTCTCTTTGCAGTTTTGCGCTTTCCTTTAAATATGCTACCAAATTTACTAAGTCAGGTAGCAAATGCAAATGTCTCGTTACAACGTTTGGAGGAACTTTTCTTAGATGAGGAGCGAAATTTAAAACAAAATCCACCTATTGAACCTGGTCTTCCAGCCATCTCAATTGAGAATGGATACTTTTCGTGGGATCCTAAGGAGGAGAAACCGACGTTATCAAATATCAATGTGGAAATACCAGTAGGCAGCTTAGTTGCAATCATTGGGGGTACTGGAGAAGGAAAAACGTCTCTTATTTCAGCAATGATTGGAGAGTTACCACCTTTAGCCGATGGAAATGCTACAATCAGAGGCACTGTTGCTTATGTGCCTCAGATTTCATGGATTTACAATGCCACAGTTCGTGAAAACATACTATTTGGATCAAAATTTGAGCATGAACGATATCGGAAAGTCATTGATATCACTGCTTTACAGCATGATCTCAACTTACTACCTGGACTTGATTTTACAGAGATTGGAGAAAGAGGAGTCAACATTAGTGGTGGACAAAAGCAAAGAGTTTCCATAGCCAGGGCTGTATACTCAAATTCAGATGTATATATATTTGATGATCCATTGAGTGCTCTTGATGCTCATATTGCTCAAGAGGTTTTCAGGAAATGTATAAAGGAAGGGCTGAGAGGAAAAACCAGGGTTCTTGTCACCAATCAGCTACATTTTCTCCCTCAGGTGGATAAAATCATTCTTGTTAGTGAAGGCATGATTAAGGAGCAGGGAACATTTGAGGAGTTATCAAAAAGTGGGCCTCTATTTCAGAGACTAATGGAAAATGCTGGGAAAATGGAACAACAAGCAGATAATAACGGAGACAGTGAAAGTCATGACAAGGATACAAATTTACCCTTGAATAATGAAGCAATTGTTGAATTACCAAGTGATGCAAGCTATGAGAAGAAAGGAAAATTACGAAAATCAGTACTTGTTAAGAAAGAGGAAAGGGAAACCGGCGTGGTTAGTTGGAAAGTCATAACGAGCACATGGCTAAGCGTGTGGACATCTCAAGATTCCGCTGCAGATAATAATGCGGCATATTTTCTTTTGATCTATACACTTTTCTCATTTGGACAGGTATCTGTGGCACTTGCCAACTCTTATTGGTTGATCGTTTCTAGTCTTCGTGCTGCCAAAAGATTGCACAATGCAATGCTGGACAAAATCCTCCGGGCTCCCATGTTATTCTTCCAAACTAATCCGGTTGGTCGGATAATTAATAGGTTTGCAAAAGACACGGGAGATATAGATACCAATGTTTTTAACTTGGTGAATATGTTTCTGGGGCAAGTTTGGCAACTGCTTTCCACATTTGTTCTTATAGGGACTGTGAGCACCATTTCTCTGTGGGCCATTATGCCACTTCTGATCTTCTTTTATGCAGCTTATATATATTATCAGAGCACGGCTCGAGAGGTCAAGCGCATGGATTCCATTACAAGATCTCCTGTTTATGCACATTTTGGTGAATCACTGAATGGTTTGTCAAGCATCCGTGCTTATAAAGCATATGACAGAATGGCACACATCAATGGAAAATTCATGGATAACAACATCAGATTCACTCTTGTGAACATAAGTTCAAATCGTTGGCTCACCATAAGGCTAGAAACATTAGGAGGCCTCATGATTTGGCTGATAGCAACATCTGCAGTCATGCAGAATGCAAGAGCTTCAAACCAGGCTTTGTTTGCATCTACAATGGGTTTACTTCTCAGTTATACTTTAAACATAACAAATCTCTTAAGTGGTGTCCTTAGGCAAGCAAGTAGAGCTGAAAACAGTTTAAATGCTGTTGAGCGTGTTGACACATATATAAATTTGGAAACTGAGGCTCCAGGTGTAATTGAGACCAACCGTCCCCCACCCGGATGGCCAACCTCAGGATCAATTGAGTTTGAGGATGTTGTTCTGAGATACCGGCCTGAACTTCCTCCAGTGCTGCATGGATTGTCCTTCACGGTACCTCCAACTGAGAAGATAGGTGTAGTTGGAAGAACTGGTGCAGGAAAATCTAGCATGCTTAATGCACTGTTTCGGATCGTGGAACTGACAAAAGGAAGAATCATTATTGATGGTTGTGATATTTCTACATTTGGACTAGCAGATCTACGAAAAGTTCTTACTATCATACCACAGTCTCCAGTTGTTTTCTCTGGGACTGTTCGTTTCAATCTTGATCCATTTAATGAGCACAATGATGCCGATCTATGGGAGGCTTTAGAAAGGGCACATCTGAAGGACGTAATAAGAAGAAATCCATTTGGTCTTGATGCTCAGGTTTCAGAGGGAGGAGATAATTTCAGTGTTGGACAGAGGCAACTGCTGAGTCTAGGTAGAGCATTGCTTCGAAGATCGAAGGTTCTTGTCCTGGATGAAGCTACTGCTGCTGTAGATGTTAGAACTGATGCCCTCATACAGAAAACTATCAGACAGGAATTTCAGTCGTGTACAATGCTCATCATTGCACACAGACTAAATACAATCATTGACTGCAATCGGATTCTGCTGCTTGATTCTGGTCGGGTTCTTGAATACAGTTCACCAGAGGAACTCCTACAAAATGAAGGAACTGCTTTCTACAAGATGGTTCAAAGTACCGGTGAAGCAAATGCTCAGTATCTATGTAGCCTAGTATTCGGAAGAACAGAGAACAATAATGAATATAACAAGGAGTTGGAAAACCATATGAGACAATTAGCTTCTACTCACTGGACTGCTGCTACCCAGTATGCCATAGCTGCTACCCTTTCTTCATTACACCATCTGCTTCCAAAACCAAGCAGTGAAGACAATGAAGATATCCTTGATAAAACAAAGGATGCAGTTACAATACTTCAAGAGGTTCTGGTGGGGAAGCATGATGAAGCCATAGAAGAGACACTGCATAAATACCATATTCCTACAGATACATGGTGGTCTACTCTCTACAAAGTTATTGAAGGTCTTGCTATCTTGAAGAGGATGCCTAAAGACAACATTCATCAAATACAACTTGATTTTGACGGAAGATCTTTTAATTAA 4656 0.4074 MSEQKMGFDPLNWYCQPAENSVWDKAVDSVFGPYTPCAINTLVISISNLVLIGLCLYRIWLIICNAKVERFCLRSNYYNYLLGMLAAYCSAQPLLRLLTGNSAFNLSGETGFAPFEIAALVVETLTWSSMIALILLETKVYIRKFRWLVRCGVIYVLVGDIVVLNLLLSVKDYCSRSALFLYISSVICQVLFGALLFVYIPDLIPYSGHSTMQTDVPDHGEYEPLCGEDQVCPERQANVFSRICFGWITPLMKQGYRKPVTEKDVWKLDKWDETETLTEKFWMGGFFKIGNDLSQFVGPILLNHLLDSMQRGDPSWIGYIYAFSIFVGVTAGVLSEAQYFQNVMRVGFRLRSTLVAAIFRKSLRLTNDGRKKCTSGKLMNMITTDANALQQICQQLHGLWSAPFRITVAMVLLYQQLGVASLTFVISKMRKLTKEGLQQTDKRVGLMNEILAAMDTVKCYAWETSFQSRILSIRDDELSWFRKAQLLYALNSFILNSIPVLVTVTTFGIFTLLGGELTPARAFTSLSLFAVLRFPLNMLPNLLSQVANANVSLQRLEELFLDEERNLKQNPPIEPGLPAISIENGYFSWDPKEEKPTLSNINVEIPVGSLVAIIGGTGEGKTSLISAMIGELPPLADGNATIRGTVAYVPQISWIYNATVRENILFGSKFEHERYRKVIDITALQHDLNLLPGLDFTEIGERGVNISGGQKQRVSIARAVYSNSDVYIFDDPLSALDAHIAQEVFRKCIKEGLRGKTRVLVTNQLHFLPQVDKIILVSEGMIKEQGTFEELSKSGPLFQRLMENAGKMEQQADNNGDSESHDKDTNLPLNNEAIVELPSDASYEKKGKLRKSVLVKKEERETGVVSWKVITSTWLSVWTSQDSAADNNAAYFLLIYTLFSFGQVSVALANSYWLIVSSLRAAKRLHNAMLDKILRAPMLFFQTNPVGRIINRFAKDTGDIDTNVFNLVNMFLGQVWQLLSTFVLIGTVSTISLWAIMPLLIFFYAAYIYYQSTAREVKRMDSITRSPVYAHFGESLNGLSSIRAYKAYDRMAHINGKFMDNNIRFTLVNISSNRWLTIRLETLGGLMIWLIATSAVMQNARASNQALFASTMGLLLSYTLNITNLLSGVLRQASRAENSLNAVERVDTYINLETEAPGVIETNRPPPGWPTSGSIEFEDVVLRYRPELPPVLHGLSFTVPPTEKIGVVGRTGAGKSSMLNALFRIVELTKGRIIIDGCDISTFGLADLRKVLTIIPQSPVVFSGTVRFNLDPFNEHNDADLWEALERAHLKDVIRRNPFGLDAQVSEGGDNFSVGQRQLLSLGRALLRRSKVLVLDEATAAVDVRTDALIQKTIRQEFQSCTMLIIAHRLNTIIDCNRILLLDSGRVLEYSSPEELLQNEGTAFYKMVQSTGEANAQYLCSLVFGRTENNNEYNKELENHMRQLASTHWTAATQYAIAATLSSLHHLLPKPSSEDNEDILDKTKDAVTILQEVLVGKHDEAIEETLHKYHIPTDTWWSTLYKVIEGLAILKRMPKDNIHQIQLDFDGRSFN 1551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g02196 1551 Coils Coil 539 566 - -
Vimu4g02196 1551 Gene3D - 559 830 IPR027417 -
Vimu4g02196 1551 Pfam ABC transporter transmembrane region 867 1105 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu4g02196 1551 Pfam ABC transporter transmembrane region 282 536 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu4g02196 1551 FunFam ABC transporter C family member 2 270 565 - -
Vimu4g02196 1551 FunFam Multidrug resistance-associated protein member 4 1159 1411 - -
Vimu4g02196 1551 ProSitePatterns ABC transporters family signature. 706 720 IPR017871 GO:0005524|GO:0016887
Vimu4g02196 1551 CDD ABC_6TM_ABCC_D1 284 556 IPR044746 GO:0140359
Vimu4g02196 1551 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 234 1415 - -
Vimu4g02196 1551 FunFam ABC transporter C family member 2 574 820 - -
Vimu4g02196 1551 Gene3D - 1159 1411 IPR027417 -
Vimu4g02196 1551 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 580 804 IPR003439 GO:0005524
Vimu4g02196 1551 Pfam ABC transporter 1192 1340 IPR003439 GO:0005524
Vimu4g02196 1551 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1165 1408 IPR027417 -
Vimu4g02196 1551 CDD ABCC_MRP_domain2 1173 1393 - -
Vimu4g02196 1551 ProSitePatterns ABC transporters family signature. 1312 1326 IPR017871 GO:0005524|GO:0016887
Vimu4g02196 1551 CDD ABC_6TM_ABCC_D2 869 1150 IPR044726 GO:0140359
Vimu4g02196 1551 Gene3D ABC transporter type 1, transmembrane domain 856 1156 IPR036640 GO:0005524|GO:0016020
Vimu4g02196 1551 Gene3D ABC transporter type 1, transmembrane domain 278 558 IPR036640 GO:0005524|GO:0016020
Vimu4g02196 1551 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1175 1409 IPR003439 GO:0005524
Vimu4g02196 1551 SUPERFAMILY ABC transporter transmembrane region 281 560 IPR036640 GO:0005524|GO:0016020
Vimu4g02196 1551 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 892 1138 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu4g02196 1551 FunFam ABC transporter C family member 2 868 1156 - -
Vimu4g02196 1551 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 576 803 IPR027417 -
Vimu4g02196 1551 CDD ABCC_MRP_domain1 580 780 - -
Vimu4g02196 1551 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 282 548 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu4g02196 1551 SUPERFAMILY ABC transporter transmembrane region 886 1155 IPR036640 GO:0005524|GO:0016020
Vimu4g02196 1551 SMART AAA_5 607 787 IPR003593 GO:0016887
Vimu4g02196 1551 SMART AAA_5 1201 1394 IPR003593 GO:0016887
Vimu4g02196 1551 Pfam ABC transporter 598 733 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g02196 Vimu-Chr4 24184173 24198154 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g02196 564 820 Calmodulin-binding Proteins AT2G36910 26.182 1.46e-23 107