Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g02189 ATGTATTCGCCTGTCTTCAACATTCTCCGCCGTATCCTCCGGTTTGTCAAAGAACCGGACCGGATCATGTCCGGCATGTCCGACGGGATAAAGGATCGACTTCAAGACTTAGGAAATATTTTGCGTTTCGACCTTCGTAATGATGTTCGAGTTGTCGGAATAAGTGGGATGGGTGGCATAGGAAAGACAACTCTTGCTCGGGCTTTATATGAAAGAATTTGTCATCAATATAATTATCGTTGTTTTATTGATGACGTAAGCAAAATATTTCTAGATTCTCGTTCGTTGGGCTTACAAAAACAATTAATTTCTCAGACTCTAAATGAGAAAAATGTAGAGATTTGCAATGTTATCGAGGGAACATGTATGGTGCAGTCCAAACTGAAGAATGCTAAGACACTTATAGTTTTTGACAACGTTGATGAAGTTCAACAACTGAGGATATTTAGCGGAAATAGAGACAATTTGTTGCGAGAATGCTTAGGTGGAGGGAGCAGAATCATCATAGTTTCTAGGGATGAACAATTATTGAAGATACATGGAGTGGATCATATTTATCAAGTTCGACCGTTGATACGGAAAGATGCTATCCAACTATTTTGTAGAAATGCTTTCAAAGATAATTATATTTTGAGCGATTACGAAAAGTTGGCAGATGAGATACTATCACATGTTGAAGGTCATCCCTTGGCAATTGAAACAATCGGGTCATCTTTGTTTGGCCGAAGTTTGTCACAATGGAAAAGTGTATTGGAAGGGCTAAAAGAAAATAAAAGTAAAAATATTATGGATATTTTGCGCATAAGTTATATTCAACTGGAAGAAAAATACAAACAAACATTTTTGGATATTGCTTGCTTCTTCAATTCTTTTCACGAAGAACGTTTGAAGGAAATTCTAAATTTCCGTGGATTTCATCCTGAAGATAGTATACAAGTTCTCATTGATAAATCACTCATTACCAGAGGTTTTCTTGGGTTCATACATATGCATAGTTTGCTAGTGGATTTGGGAAGGTGTATTGTTCGGGAAGTATCACCTAAAGAGCCTATAAAGTGGAGTAGGTTGTGGACATGCAAAGATTTCCATGATGCTATGTCAGAGAACGAGCGGTTATCCAATTTGAAGCGTTTGAATCTCTCTGATTGCAAAAGTTTAGTTGAGATGCCAGATGTAGCAGAGGCCCTAAATCTTGAATGGATAATTCTTCAAGGATGCGATTGCAAGCGATTGAAATACTTGCCCGATCTTCCTTCACGAACTGTCTTGTCCTCAGAACCTTTCACAGTATTCCCATCTTCAATATATTATTTGCGTCACTTATGGAATGCGATAGATTTTTATGATAAAAGTGCAGGATTAATTATTTTCGGCTGCCCAGAATTAGTTGAGATTGAACAGTGCTTTAGAAAGAGTTTTTCATGGACAATTCAAATTATTGAGGCGACCTACCAATGGCCATGCCCTGAAAGATTTATGCTTAAAAGTATTATGCCTGAAAGTATTATGCCTGGAAGTCAAATACCGAACTTGTTCAACAATGAGTTTGTGAATGTGGACATAGAATACCTGGACGATAAATACCTAATCGTTGATCCACCTCCCGTTCCGCATGACAATAATTTCATTGGTGCTTTGTGTTGCGTAATATTTCGTCTGGACAATGAACAAATTCCAATGGATTTTAGAAGAGATCACATATGGTTACATTATGAAGAGCTTTATATGGACGAATGTGGTATTGATACTCCTCCTTTCAGTTTGATGAATATTATCCAATTGTTGGGTTACGAGGATTTTGTTACGGTGGATGTGAAGAAATTTCAGTATCGCTGGATAAATGAACAAGACCTAATTAACCTCAAAATGACGCATTGTGCAAATTTGTCAGGTGGGAAGCGCAAGATTTCCGTAATTGAGGAAAACGGTTAG 1932 0.3747 MYSPVFNILRRILRFVKEPDRIMSGMSDGIKDRLQDLGNILRFDLRNDVRVVGISGMGGIGKTTLARALYERICHQYNYRCFIDDVSKIFLDSRSLGLQKQLISQTLNEKNVEICNVIEGTCMVQSKLKNAKTLIVFDNVDEVQQLRIFSGNRDNLLRECLGGGSRIIIVSRDEQLLKIHGVDHIYQVRPLIRKDAIQLFCRNAFKDNYILSDYEKLADEILSHVEGHPLAIETIGSSLFGRSLSQWKSVLEGLKENKSKNIMDILRISYIQLEEKYKQTFLDIACFFNSFHEERLKEILNFRGFHPEDSIQVLIDKSLITRGFLGFIHMHSLLVDLGRCIVREVSPKEPIKWSRLWTCKDFHDAMSENERLSNLKRLNLSDCKSLVEMPDVAEALNLEWIILQGCDCKRLKYLPDLPSRTVLSSEPFTVFPSSIYYLRHLWNAIDFYDKSAGLIIFGCPELVEIEQCFRKSFSWTIQIIEATYQWPCPERFMLKSIMPESIMPGSQIPNLFNNEFVNVDIEYLDDKYLIVDPPPVPHDNNFIGALCCVIFRLDNEQIPMDFRRDHIWLHYEELYMDECGIDTPPFSLMNIIQLLGYEDFVTVDVKKFQYRWINEQDLINLKMTHCANLSGGKRKISVIEENG 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g02189 643 PRINTS Disease resistance protein signature 370 386 - -
Vimu4g02189 643 PRINTS Disease resistance protein signature 127 141 - -
Vimu4g02189 643 PRINTS Disease resistance protein signature 225 239 - -
Vimu4g02189 643 PRINTS Disease resistance protein signature 51 66 - -
Vimu4g02189 643 Gene3D - 21 184 IPR027417 -
Vimu4g02189 643 SUPERFAMILY "Winged helix" DNA-binding domain 261 364 IPR036390 -
Vimu4g02189 643 Gene3D - 191 274 IPR042197 -
Vimu4g02189 643 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 29 284 IPR027417 -
Vimu4g02189 643 SUPERFAMILY L domain-like 370 442 - -
Vimu4g02189 643 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 25 363 IPR044974 GO:0006952
Vimu4g02189 643 Gene3D Ribonuclease Inhibitor 351 474 IPR032675 -
Vimu4g02189 643 Pfam NB-ARC domain 47 262 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g02189 Vimu-Chr4 24134018 24138183 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g02189 48 357 WRKY Transcription Factor Family AT5G45050 32.476 8.16e-40 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g02189 - - var:108323681 614.764