Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g02182 ATGAAGGAGAAAGGTATCAAATTTGAAGAAAGTAAGGTTTCCAATTCCAAAACTCACATGGTGTTAGATTTTGTTAAGTTTTCCAATGATCAAACACTTTGTGGGTCAAAAGTGGAATTGGATTTTTTCAATGCCAAGGGTTCATCTTCTAGGGCAAATCACACTCAAGGAAGAGATGAACACAACAAAGAGGAGAAGCCATCATCAGAAACCAACAAGACCTTTTCCTGCAACTTCTGTCAGAAAGAGTTTTCTTCTTCACAAGCATTGGGAGGACACCAGAATGCCCATAAACAAGAACGTGCCCTAGCAAAACGAAGACAGGGGATTGATGGTGGTGCTTTTGGGAACCCTCATTTTCTCTATTACCCTTATAATCCCACACACTCTTTCTATGGATCTTACAATAGGGCACTTGGGGTTCGAATGGAGTCAATGATTCACAAACCTATGTATCCTTCATCTTCTTCATTAGGTTTAAGGTTTGGTCAAGGGTTGTCGAGACAAGCTGTTGGTTTGCAAGCAAATGCTGGAATCAAGATCATGGGGACTGACACAACTTTTAGGGCACAACGTGATCTTGGTAATAATACCAGACACAGTATTCCATTCCTTGCAGAATCTTCTGCAAATGTCACTGCCAAAGCAAATTTGACTCCGTTGAATCGTGTGGATGACAATGATGATGATCACACCAAGAAAGAAGGAACTTCAAATCCTAGTTCTTCAGATGAAATTGATTTGTCACTTAAACTTTAG 759 0.4005 MKEKGIKFEESKVSNSKTHMVLDFVKFSNDQTLCGSKVELDFFNAKGSSSRANHTQGRDEHNKEEKPSSETNKTFSCNFCQKEFSSSQALGGHQNAHKQERALAKRRQGIDGGAFGNPHFLYYPYNPTHSFYGSYNRALGVRMESMIHKPMYPSSSSLGLRFGQGLSRQAVGLQANAGIKIMGTDTTFRAQRDLGNNTRHSIPFLAESSANVTAKANLTPLNRVDDNDDDHTKKEGTSNPSSSDEIDLSLKL 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g02182 252 ProSitePatterns Zinc finger C2H2 type domain signature. 77 97 IPR013087 -
Vimu4g02182 252 Gene3D Classic Zinc Finger 50 111 - -
Vimu4g02182 252 SUPERFAMILY beta-beta-alpha zinc fingers 72 102 IPR036236 -
Vimu4g02182 252 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 9 252 IPR044246 GO:0009788
Vimu4g02182 252 MobiDBLite consensus disorder prediction 47 72 - -
Vimu4g02182 252 ProSiteProfiles Zinc finger C2H2 type domain profile. 75 102 IPR013087 -
Vimu4g02182 252 MobiDBLite consensus disorder prediction 222 240 - -
Vimu4g02182 252 MobiDBLite consensus disorder prediction 215 252 - -
Vimu4g02182 252 MobiDBLite consensus disorder prediction 53 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g02182 Vimu-Chr4 24090567 24091355 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g02182 68 188 C2H2 Transcription Factor Family AT5G10970 44.715 4.47e-21 87.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu4g02182 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g02182 - - gmx:102661483 320.857