Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g02181 ATGAGGAAGAAGCTCGACACCCGTTTCCCCGCTCTGACAGAGATACCAATCTCCATATCACCAAATTTGAAGCATGCAGAAGGGGAAGGGGATGGGGCTCGGATAAAGAAGATAATGCAAGCAGATGAGGATGTCGGAAAGATAGCATTGGCAGTTCCTGTTTTAGTATCTAAAGCTTTGGAGTTATTTTTGCAAGATCTCTGTGACCGCACTTATGAAATAACTCTTCACAGAGGAGCAAAGACCATGAATGCACTGCATTTGAAACATTGTGTACATAGTTATAACGTCTTCGACTTTCTGAGAGACATTGTCAGCAGGGTTCCTGACTATGGGCATGGACATGGCCATTCTGAGGCTGGAGCTGATGATCGCGCCCTTTCAAAGAGAAGGAAAGCTGCTGGCGTTGAGGGCAATGAAAGTGATGAAGAGGCCAAGAGGAGTAAGATGCACGAGTTGGGCCACACCAGCACTCCTGGTAGGGGAAGAGGCCGAGGTAAAGGAAGAGGGCGTGGACGAGGGGTTCGAACTGTTGAAAGAGACATCATTCATCAGCAGGTTGAATCTGAGCCTTGCTCCTCTATTCAACAAATTAGCAATGATATGCCTAACACAAGTCTGCCAATAGATAATGGTGTGCAATTCAAGGAGTACTCAAAGGAGACTTCTGCAGCTCATGAGGAAAGTGCTCAGTCTTTCCGTAACATTGATCTGAATGCTAACTTAAACGAAAATGAAGACAAAAATGCAAGTGCAGCTGTTGAAGCTCCATTGTCTGAGCCTGCTGACATGGACATTAAACATGAAGAAATTCCAGGCTGGTCCCTATTGAACGCCGACAAGATGGCCATTGACACTATGCAACTGGCAACCCTCGGTAGTAGACTAGAAGAGGATGATGAAGATTATGATGAGGAAGGGTAA 924 0.4578 MRKKLDTRFPALTEIPISISPNLKHAEGEGDGARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLHRGAKTMNALHLKHCVHSYNVFDFLRDIVSRVPDYGHGHGHSEAGADDRALSKRRKAAGVEGNESDEEAKRSKMHELGHTSTPGRGRGRGKGRGRGRGVRTVERDIIHQQVESEPCSSIQQISNDMPNTSLPIDNGVQFKEYSKETSAAHEESAQSFRNIDLNANLNENEDKNASAAVEAPLSEPADMDIKHEEIPGWSLLNADKMAIDTMQLATLGSRLEEDDEDYDEEG 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g02181 307 FunFam dr1-associated corepressor homolog 24 107 - -
Vimu4g02181 307 MobiDBLite consensus disorder prediction 112 175 - -
Vimu4g02181 307 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 33 92 IPR003958 -
Vimu4g02181 307 Gene3D Histone, subunit A 32 107 IPR009072 GO:0046982
Vimu4g02181 307 MobiDBLite consensus disorder prediction 187 206 - -
Vimu4g02181 307 SUPERFAMILY Histone-fold 39 108 IPR009072 GO:0046982
Vimu4g02181 307 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 33 139 - -
Vimu4g02181 307 MobiDBLite consensus disorder prediction 112 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g02181 Vimu-Chr4 24081568 24086222 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g02181 1 296 CCAAT-HAP5 Transcription Factor Family AT3G12480 47.727 4.78e-73 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Vimu4g02181 CBFD_NFYB_HMF 3.2e-17 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g02181 K21752 - gmx:100810093 418.313