Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g02180 CCACAAAATGAACAAATTGAAAAAATTGTTCAAGAGATCATATATAATTTGAGACCAAAAATTTTAAATCTTCCAAGGGATGAACTAGTTGGGATAGAGGATCGAGTTCAAGACTTAGGAAATATTTTGCGTTTCGACTTCCTTAATGATGTTCGAGTTGTCGGAATAAGTGGGATGGGTGGCATAGGAAAAACAACTCTTGCTCGGGCTTTATACGAAAGAATTTGTCATCAATATAATTATTGTTGTTTTATTGATGATGTAAGCAAAATATTTCTTGATTCTCGTTCGTTGGGCTTACAAAAGCAATTAATTTCTCAGACTCTAAATGAGAAAAATGTAGAGATATGTAATGTTATCGAGGGAACATGTTTGGTGCAGTCCAAACTGAACAATGCTAAGGCACTTATAGTTTTTGACAACGTTGATGAAGTTCAACAACTGAGGATATTTAGCGGAAATAGAGACAATTTGTTGCGAGAATGCTTAGGTAAAGGGAGCAGAATCATCATAGTTTCTAGGGATGAGCAAATATTGAAGATACATGGAGTGGATGATATTTATCAAGTTCGACCGTTGATACGGAAAGATGCTATCCAACTATTTTGTAGAAATGCTTTCAAAGTTAATTACATTTTGAGCGATTATGAAAAGTTGGCACGTGAGATACTATCACATGTTGAAGGTCATCCCTTGGCAATTGAAACAATCGGGTCATCTTTGTTTGGCCGAAGTTTGTCACAATGGAAAAGTGTATTGGAAGGGCTAAAAGAAAATAAAAGTAAAAATATTATGGATATTTTGCGCATAAGTTATATTCAACTGGAAGAAAAATACAAACAAACATTTTTGGATATTGCTTGCTTCTTCAATTATTTTCACGAAGAACGTCTGAAGGAAATTCTAAATTTCCGTGGATTTCATCCTGAAGATAGCATACAAGTTCTCATTGATAAATCACTCATTACTAGAGATTTCGATGAGAGAATACGTATGCATAGCTTGCTAGTGGATATGGGAAGGTGTATTGTTCGAGAAGTATCACCTAAAGAGCCTATAAAGTGGAGTAGGTTGTGGACACGCAAAGATCTCCGTGATGCTATGTCAGAGAACGAGGCAACTCGAAACCTTGAGGCAATAGTTCTTAGATATCACCTGGATGAGGTTGGTGTTAAAATCCCAGATGAAACAATCAAGGCGGATGGTCTATCAAAAATTAAACACCTGAAATTGCTTGATGTTCGGAACGTGAAGTTTTCGGGAAGTCTGAGTCATCTTTCGAATGAAATAGGATATCTTGTTTGGTACAGATATCCGTTTGAGTGTTTGCCTCAAAGTTTTCAGCCACACAAACTAGTTGAGTTAAACCTGTATGGGAGCAGTATTCAACGACTGTGGGAAGGTACAAAGCCTTTATCCAATTTGAAGCATTTGGATCTCTCTCTTTGCAAAAGTTTAGTTGAGATGCCAGATGTAACAGAGGCCCTAAATCTTGAATCGATAAATCTTGAAGGATGTGGACAGCTCCAAAATCTCAATCCATCGATTGGGAGTCTGAGAAAGCTTGTTGTTTTGAAGTTGAGAGACTGCAAAAAACTAGTAATCTTATCCAATACTATATTGGGCCTAAATTCTCTTAAATATTTGGATGTCTACGGTTGTTCAAAAATAGGTAGTAATTGGTTACTAGATGAAACAGGGAACACAGAGCACATGATGAGCTGTTTGTCGCCCTCCTCTCCTCTCTCTTGTTTGTGTGAACTCGATCTAAGCTTCTGTAACGTAGTTCAAATTCCTGATTATATTGGAAAGTTAAGTTGCTTAGAGAAGCTAAATTTAAAGGGAAACAATTTTGTTAAATTGCCTAACCTCAAGGACCTTTTGAGACTGTATTTTTTAGATTTACGGAATTGCAAGCGATTGAAATACTTGCCTGATCTCCCTTCACAAACAGTCTTGCCCTCAAAACCTTTAATGTTGTCGAGATTCCCATCTTCAATGTTTCATGATCTCCCATACTATATGGATTTTAGATTTAGAGGATTAATTATTTTCGGCTGTCCAGAATTAGTTGAGATTGAAGAGTGCACTACAAAGAGTATTTTATGGACAATTCAAATTATTGAGGCGGCCTATCAATTGTCATTCCCTAGAACTTATATCCCTGAAAGTATTATGCCTGGAAGTCAAATACCGAGCTTGTTCAACAATGAGTTTGTGAACGTGGACATACAATACCCGGACAATAATTTCATAACCATTTATCCACCTCCCGTTCCGCATGACAATAATTTCATTGGTGTTTTGTGTTGCGTAATATTTCGTCTACACAATAAACATATTCCAATGGATTTTAGAAGAGATCACATGTGGTTACATTATAAAGATGTTTCTATGGACGGACGTGATATTCATCCTTATCCTTTCAGATTGAGGTCGATTAACGCATTGTTGGATGACAGGGATTTTGCTGCATTGGATGTGAAGAAATTTCAGTATCGCTGGGTAAATGAACAAGACCTAATTAACTTCAAAATAACGCATTGTGCAAATTTGACAGCTCGGAAGATTTCCGTAATTGAGGAAAACGGTTAG 2595 0.3661 PQNEQIEKIVQEIIYNLRPKILNLPRDELVGIEDRVQDLGNILRFDFLNDVRVVGISGMGGIGKTTLARALYERICHQYNYCCFIDDVSKIFLDSRSLGLQKQLISQTLNEKNVEICNVIEGTCLVQSKLNNAKALIVFDNVDEVQQLRIFSGNRDNLLRECLGKGSRIIIVSRDEQILKIHGVDDIYQVRPLIRKDAIQLFCRNAFKVNYILSDYEKLAREILSHVEGHPLAIETIGSSLFGRSLSQWKSVLEGLKENKSKNIMDILRISYIQLEEKYKQTFLDIACFFNYFHEERLKEILNFRGFHPEDSIQVLIDKSLITRDFDERIRMHSLLVDMGRCIVREVSPKEPIKWSRLWTRKDLRDAMSENEATRNLEAIVLRYHLDEVGVKIPDETIKADGLSKIKHLKLLDVRNVKFSGSLSHLSNEIGYLVWYRYPFECLPQSFQPHKLVELNLYGSSIQRLWEGTKPLSNLKHLDLSLCKSLVEMPDVTEALNLESINLEGCGQLQNLNPSIGSLRKLVVLKLRDCKKLVILSNTILGLNSLKYLDVYGCSKIGSNWLLDETGNTEHMMSCLSPSSPLSCLCELDLSFCNVVQIPDYIGKLSCLEKLNLKGNNFVKLPNLKDLLRLYFLDLRNCKRLKYLPDLPSQTVLPSKPLMLSRFPSSMFHDLPYYMDFRFRGLIIFGCPELVEIEECTTKSILWTIQIIEAAYQLSFPRTYIPESIMPGSQIPSLFNNEFVNVDIQYPDNNFITIYPPPVPHDNNFIGVLCCVIFRLHNKHIPMDFRRDHMWLHYKDVSMDGRDIHPYPFRLRSINALLDDRDFAALDVKKFQYRWVNEQDLINFKITHCANLTARKISVIEENG 864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g02180 864 SUPERFAMILY "Winged helix" DNA-binding domain 263 365 IPR036390 -
Vimu4g02180 864 SUPERFAMILY L domain-like 400 742 - -
Vimu4g02180 864 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 286 IPR027417 -
Vimu4g02180 864 Gene3D Ribonuclease Inhibitor 373 564 IPR032675 -
Vimu4g02180 864 Gene3D Ribonuclease Inhibitor 567 698 IPR032675 -
Vimu4g02180 864 Pfam Leucine Rich Repeat 451 470 IPR011713 -
Vimu4g02180 864 ProSiteProfiles Leucine-rich repeat profile. 607 628 IPR001611 GO:0005515
Vimu4g02180 864 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 5 557 IPR044974 GO:0006952
Vimu4g02180 864 Gene3D - 19 185 IPR027417 -
Vimu4g02180 864 PRINTS Disease resistance protein signature 470 486 - -
Vimu4g02180 864 PRINTS Disease resistance protein signature 129 143 - -
Vimu4g02180 864 PRINTS Disease resistance protein signature 227 241 - -
Vimu4g02180 864 PRINTS Disease resistance protein signature 53 68 - -
Vimu4g02180 864 Gene3D - 193 276 IPR042197 -
Vimu4g02180 864 Pfam NB-ARC domain 50 264 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g02180 Vimu-Chr4 24076852 24080033 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g02180 28 648 WRKY Transcription Factor Family AT5G45050 30.876 7.60e-69 247
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g02180 - - vra:106760531 1249.19