Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g02176 ATGAACAATCCCAACACCAACAGCTTCTCTCTGTTTGGTTTTCTTCATTCCCCCCACTTCTCTGAGCTTCTCAGGGATTTCGCCACGCGAGAACTCAACGCGTTTTTATGGCTATCTCTACTTGTTGTCACCACCCTTTTGCTCAGAAGACTCTTTAGCCTATTTGGGATATGGCGCAGGGCTAGAACCATTCCTGGGCCTCCCTCTTCCTCTTTTTTTGGCGGCTGCAAGCTCTTTTCCCGGCCAAATTTCACCTTCACTGGTGGGTTCTCCCTTTTGGTGTCAGTAAGGGATCCAATCTTAATCCAAGACATGCTTATAAAAGCCGAGGATAAGTTGCCTTACACGGGAAAACTGTTTCATCTGGCCTTTGGGCAATCAAGCCTCTTTGCCCCTTCATTTGAAAAGGTGCAAAAGAGAAGGGAATTATTGGCAACAGAGTTAAACGAAAGATTGCTGAAGAATGGTGATATGATTCCTGTGAAAGTTGCAGACTTTATCACAGATAAAATAGAAAACATTAAAAAGAAAGGAGGTATTGATTCCAGGTTGGTTTCTCAACATATCGCTTTCACTATAATGGGAGTCACATTCTTTGGAGATGGCTTCTTGGCCTCACCGAAGGCTGCAATGTATGAGGAACTGTTCATGACCATTGCTAAAGATGCTTGCTTTTGGGCCTCCTATAATGTTACTCCTTTCTGGAGACGTGGATTTTGGAAGTACCAATGCTTATGTACAAAGTTGAAATGCTTAACTCAAGACATCCTTCAACATTGCAGAAAAGGCTGTAAACTATCTAGCCATACTAAGCATGATGTACATAATGAAAGTTCCAATAAAGAAATGAAGTCAGCAGATGGTGCAAAATGCTGTTCTGATGATGAGTTCCAAGATTACTATTTCTTTCGAGATCTTAAGGATCATCAAGATGGTAAAGAAGAATCTTGTGGGAATGTAATGCGCATGATATTTCACGGATGTCAAACTACCTCTGTTCTAATCACGGATGTATTGACTAGGCTTGTCATGCATGGGGAAATACAGGATAAGGTTTATTCGGAGATTAGAATGGTAGGAAGAAACCCATCGAAATATGAGCATGAAGATGTTTATAGGATGCCGTTATTATTGGCTACAATTTATGAATCTGCACGCCTTCTTCCCACTGGTTCCATGCTGCAGAGATGTTCTTTAAAACATGACTTGAGCTTTGCATCTGGTGTAACCATTCCTGCTGGAGCTGTATTGGTTGTACCAGTTGAATTGGTACAGAAGGATGAATTCAATTGGGGGAGTGATGCAAGTCATTTCAATCCTTACAGATTTCTCTCAACTGTTACAAATAGATCAGGTTCTGCTGAAGACCTTTCTAGTACAGGATTCAGTTCATTTGTACTAAATGATCCAAATGAAAATGCAGCATTCTTGCCTTTTGGATCTGGTGCACGGGCCTGCATTGGACAGAAATTTATCATCCAACTTGTTGCCTCAGTGTTGGCATCATTGCTAAATAAATATGAGATACGGCTTAGCTCAGACTCAAATGATGACTCAAACACAACCTTGAAGAATAATCTTCTGCAGCGTCATCCCAATGAATGGGGAAGTTCTCTGGCTCATTGTGGTCTTTGGGAGGATGAATCTAACCTGAGTTTCTTAGCTCAAGTTTTTTTCCTCCCTGTTTTTAAACATTGCCCTGGTGTTGGCTTCATGCCCTGA 1722 0.4146 MNNPNTNSFSLFGFLHSPHFSELLRDFATRELNAFLWLSLLVVTTLLLRRLFSLFGIWRRARTIPGPPSSSFFGGCKLFSRPNFTFTGGFSLLVSVRDPILIQDMLIKAEDKLPYTGKLFHLAFGQSSLFAPSFEKVQKRRELLATELNERLLKNGDMIPVKVADFITDKIENIKKKGGIDSRLVSQHIAFTIMGVTFFGDGFLASPKAAMYEELFMTIAKDACFWASYNVTPFWRRGFWKYQCLCTKLKCLTQDILQHCRKGCKLSSHTKHDVHNESSNKEMKSADGAKCCSDDEFQDYYFFRDLKDHQDGKEESCGNVMRMIFHGCQTTSVLITDVLTRLVMHGEIQDKVYSEIRMVGRNPSKYEHEDVYRMPLLLATIYESARLLPTGSMLQRCSLKHDLSFASGVTIPAGAVLVVPVELVQKDEFNWGSDASHFNPYRFLSTVTNRSGSAEDLSSTGFSSFVLNDPNENAAFLPFGSGARACIGQKFIIQLVASVLASLLNKYEIRLSSDSNDDSNTTLKNNLLQRHPNEWGSSLAHCGLWEDESNLSFLAQVFFLPVFKHCPGVGFMP 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g02176 573 Pfam Cytochrome P450 82 525 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu4g02176 573 Gene3D Cytochrome P450 53 536 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu4g02176 573 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 479 488 IPR017972 GO:0005506|GO:0016705
Vimu4g02176 573 PRINTS E-class P450 group IV signature 486 504 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu4g02176 573 PRINTS E-class P450 group IV signature 374 390 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu4g02176 573 PRINTS E-class P450 group IV signature 470 486 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu4g02176 573 PANTHER CYTOCHROME P450 32 515 - -
Vimu4g02176 573 CDD cytochrome_P450 82 532 - -
Vimu4g02176 573 SUPERFAMILY Cytochrome P450 64 517 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu4g02176 573 PRINTS P450 superfamily signature 486 497 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu4g02176 573 PRINTS P450 superfamily signature 326 343 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu4g02176 573 PRINTS P450 superfamily signature 379 390 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu4g02176 573 PRINTS P450 superfamily signature 477 486 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g02176 Vimu-Chr4 24058772 24063736 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g02176 34 508 Cytochrome P450 AT1G13710 24.303 1.14e-22 99.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g02176 - - vum:124847778 998.038
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g02176 4 24058772 24063736 Vimu4g02176 4 24058772 24063736 ECH