Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g02169 ATGCCTCTTTTGCAGATTGAACCGGGTGAAGATATTCGTGTCATTGGGATCTATGGACTTGGAGGCATAGGTAAGACAACAATTGCAAGGGCATTGTACAACATGATTGCAGACCAGTTTGAAGCTACAAGTTTCCTTTCTGACATAAGAGAAAGTTCAAATCAAAGACAAGGGCTAGTGCAGCTTCAAGAATCACTTCTTTTTGATACTGTTGGGGACAAGAACATCAAGCTGGGAAGCATTTACAAAGGAATCCCTATTATCAAGAAAAGGCTTTGTTGCAAAAAAGTACTTTTGATCATTGATGATGTTGACAGGTTGGAGCAGCTTCAAGCACTGGCAGGAGGGCGCGATTGGTTTGGTTTTGGAAGTGTGATCATCATAACAACAAGAGATAAGCAATTGCTGAGTGCTCATCAAGTTGACAAAACCTATGAGGTAAAGAAATTAAACTATGGTGAAGCTTTTGAACTGTTCACTTGGAGTGCTTTCAAAAGGAAGGCACCTGATGCAGGCTATTTGGAGGTTTCTAACCGTGTGGTTCTCTATGCTGAGGGCCTTCCATTGGCTTTGAAAATAATGGGGTCTAATTTGTTTGGTAAAACAGTGGAAGAGTGGAAGTCTGCCTTGGGAAAATATGAGAGGATTCCTAACAAAGAGGTTCAGAATGTGTTAAGAGTAACCTATGATAATCTAGAAGAGAATGAGAAAGAAATTTTCCTTGATGTGGCATGCTTCTTCAAGGGAGAGACAGCAGAATATGTAGAAAAAACACTGCAAGCCTGTGGTTTTTATCCAACAATTGGTATCAGTGTACTTATTGATAGATCTCTTGTTAGTATTGATGAATATAACAGATTGAGAATGCATGATCTAATTCAAGACATGGGTAGGGAAATAGTTAGAGAAGTTTCACCATTAGAACCTGGAAAAAGGAGTAGATTGTGGTATCATGAAGATGTTTTGGAAGTTCTCACTGAAAATAAGGGGACTTATAGAATTCAGGGCATGATGGTTGACCTCCCTGATGACTACATGGTACACTTGAAAGATGATTCCTTCAAGAAGATGAAAAATCTTAAAATTCTCATAGTTAGAAATGGAAACTTTTTTGGAAGCCCCCAACATCTTCCGAACAGCTTAAGGTTGCTTGATTGGATGAAATATCCTTCGTCTTTGCCATCTAGTTTTCAACCAAAGAAACTTGTTGTACTCAACTTGTCAGGCAGTCGTTTCACAATGCAAGAGCCATTCAAGTATTTGGATTCCTTGACTTCTATGGACTTGAGTTCCTGTGAATTGTTGACAAAACTACCTGAAATTGCAGGAGTCCCTAATCTAACACAGCTAACTCTTGACTATTGTACAAATTTAGAAGAAGTTCATGAATCTGTTGGATTCCTTGAGAAACTTGTTGAGTTTAGGGCTTATGGATGCACCAAGCTTAAGGTTTTTCCAAATGCCATCAGGTTGACATCATTGAGAAGTCTTATCCTTAATTGGTGTTCAAGCCTTCAAAATTTTCCAGCTATTTTGGGGAAAATGGATAACCTCATTTCCATTTCTATAGAAGGCACTGGTATAAAAGAATTGCCTCCTTCCATTGGAAACCTTGTTGGTCTTCAAGAATTAAGCATGACATCTTGCTTAAACCTCAAGGAACTGCCTCACAACTTTGATATGCTTCAAAGTCTTACAAACCTTGATATGGAGGGCTGTCCACATCTCCGAAACTTTCTGACAAAGTTGGCAAACATGGGAGAATCTACACATACCTTTGGCAACATTCTGTCACTGAATGTAGAAAACTGTGGCCTTATAGATGAAGATCTTCCCATAATTTTCAATAATTTCCCAAATTTAGCATCAGTAGTACTCTCGGGAAATAATTTTAAAGCTCTTCCAAGCTGCATACAACAATGTCCATGCTTGGAACTACTTCACTTGGACAACTGTAAAAACATCCAAGAAATTTCAGCATTTCCTCCTAACATGCAGTACATTAATGCACAAAATTGTATATCATTGTCTGCAGAGTCATCCAATTTATTATTGAACAAGGAAACTTTTGAGGGATGGGAATTACAGGCTATGGTGCCTGGAACAATGGTTCCAGAGTGGTTTGACCACATCACCAAAGGAGAATACATGACATTTTGGGTACGTGAAAGGTTTCCAGCTATTATCATATGTTTTGTTCTTGAGGTTGAGAGTGAAATGAAGAAAATTTTCAGTTGTGAAATCCGCTTTTATATAAATGGTGAAGAAGTTTATGAATTGCAAATTCCAAGAGGCTTTTCAGATATGGTGACAGATCATGTGTGGCTCTATGACTTGAGAACTCATTCATCCATCAACTGGCGCAGTCTTGATTTGTATCTGATGGATGGCTGGAATCAGGTTGAGATTTCATGTGAGAAGATAAGTGGAGCATCAAATGTGACTGTGAGTTGGTCTGGAGTTCATGTGGTTAAGCAAGACGCCAACATGAAGGATATACTACTTACAGATCCTGATCCAGATTTAGATTCAGTTATAGCTTCTGGATCAAACACACTAGTTTATGATCATCCAGTGAAAGCTCAACCACAATCCCAAGTCACAAGCTTCATACTACAGACACCTCAAAATAATAACAGCTCCACAATTGTGCTGCCAACAACAGTTCAAACCAGCTTGACTGTAAATGATGCAGACATGGAAGCATTTTATGCTGTTCTGGATGATGAGATCTCTGTGGTGTCACTTAACAATGATTCAACAATGGTTTCTAAATTGACCAACCAAAGGCCAAGTGAAGAGACAGAGAAAGCATTGAAGACACTTCAAGCCCATGTCACTAAAGAATTTTCTGCTCTGCTGGGCCCTAATGAATACAGTACAATGAATGATACCTTAGAGTACCTCACAAATTTGCCAGCAGAAGATGGAATATCAGTGGAAATAAGATCTCTGATAATACAAGTTTCAAGACAGTTCACTCGTTGGAGTAGGGATTACACATCTGAGAACAAGAAAATAGAGTCTACCACAGCCAAATTGTTGAAAGCTGATGAACTAGAAAAGTGTCTTGAAGCTAATAAGACTAACTTCAAGCAAGTGATGTGCATGGAAAATGAGTTGAGCAATGATTTGGCCTATTTGGAACAAAGAAAGAGAGAGCTAGAAGAGCAGATAAATGCTGTTAAAGCTAACATCTCTGCTTCAGAAGCAGCTAAGAACATGGCTACTCAAATAAAAAGAGAAATCTTTGGGGAAGCAAAGATTTTGAAAGCTCAAAGAGATGAGTTGAGGGAACAAGTGCCACACTTGAGAGATGAACAGGAATTGGCCAAGAAAATTCAGTCAAATATCAGAGATGAATGGTCAAAGCTTGGTATTGTGCTTCCTCTTCTCTTCTGTGTGTCATCATTTTCACGGGCTCGGGCTGTTTGGTGTTGTTGTGTGGTGGTGAGATCTAGCACTTCTTCTAGCAGACGTCCAGATGCGACTAAGGGTAGCCGCAGTTGGGATCTGCGACACTTGTTAGCCGACAATGCAAGCTGCGGCACAGAGGAGGGGGGTGCGCCTGAGTTGCGGTTCGTTGCGAGCTACGGTTAG 3600 0.3969 MPLLQIEPGEDIRVIGIYGLGGIGKTTIARALYNMIADQFEATSFLSDIRESSNQRQGLVQLQESLLFDTVGDKNIKLGSIYKGIPIIKKRLCCKKVLLIIDDVDRLEQLQALAGGRDWFGFGSVIIITTRDKQLLSAHQVDKTYEVKKLNYGEAFELFTWSAFKRKAPDAGYLEVSNRVVLYAEGLPLALKIMGSNLFGKTVEEWKSALGKYERIPNKEVQNVLRVTYDNLEENEKEIFLDVACFFKGETAEYVEKTLQACGFYPTIGISVLIDRSLVSIDEYNRLRMHDLIQDMGREIVREVSPLEPGKRSRLWYHEDVLEVLTENKGTYRIQGMMVDLPDDYMVHLKDDSFKKMKNLKILIVRNGNFFGSPQHLPNSLRLLDWMKYPSSLPSSFQPKKLVVLNLSGSRFTMQEPFKYLDSLTSMDLSSCELLTKLPEIAGVPNLTQLTLDYCTNLEEVHESVGFLEKLVEFRAYGCTKLKVFPNAIRLTSLRSLILNWCSSLQNFPAILGKMDNLISISIEGTGIKELPPSIGNLVGLQELSMTSCLNLKELPHNFDMLQSLTNLDMEGCPHLRNFLTKLANMGESTHTFGNILSLNVENCGLIDEDLPIIFNNFPNLASVVLSGNNFKALPSCIQQCPCLELLHLDNCKNIQEISAFPPNMQYINAQNCISLSAESSNLLLNKETFEGWELQAMVPGTMVPEWFDHITKGEYMTFWVRERFPAIIICFVLEVESEMKKIFSCEIRFYINGEEVYELQIPRGFSDMVTDHVWLYDLRTHSSINWRSLDLYLMDGWNQVEISCEKISGASNVTVSWSGVHVVKQDANMKDILLTDPDPDLDSVIASGSNTLVYDHPVKAQPQSQVTSFILQTPQNNNSSTIVLPTTVQTSLTVNDADMEAFYAVLDDEISVVSLNNDSTMVSKLTNQRPSEETEKALKTLQAHVTKEFSALLGPNEYSTMNDTLEYLTNLPAEDGISVEIRSLIIQVSRQFTRWSRDYTSENKKIESTTAKLLKADELEKCLEANKTNFKQVMCMENELSNDLAYLEQRKRELEEQINAVKANISASEAAKNMATQIKREIFGEAKILKAQRDELREQVPHLRDEQELAKKIQSNIRDEWSKLGIVLPLLFCVSSFSRARAVWCCCVVVRSSTSSSRRPDATKGSRSWDLRHLLADNASCGTEEGGAPELRFVASYG 1199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g02169 1199 Gene3D - 1 145 IPR027417 -
Vimu4g02169 1199 Pfam NB-ARC domain 10 225 IPR002182 GO:0043531
Vimu4g02169 1199 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 242 IPR027417 -
Vimu4g02169 1199 Coils Coil 1038 1072 - -
Vimu4g02169 1199 CDD UDM1_RNF168 1052 1114 - -
Vimu4g02169 1199 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 10 557 IPR044974 GO:0006952
Vimu4g02169 1199 Gene3D Ribonuclease Inhibitor 326 506 IPR032675 -
Vimu4g02169 1199 Gene3D Ribonuclease Inhibitor 507 689 IPR032675 -
Vimu4g02169 1199 Coils Coil 1080 1107 - -
Vimu4g02169 1199 SUPERFAMILY "Winged helix" DNA-binding domain 220 325 IPR036390 -
Vimu4g02169 1199 Gene3D - 149 233 IPR042197 -
Vimu4g02169 1199 PRINTS Disease resistance protein signature 91 105 - -
Vimu4g02169 1199 PRINTS Disease resistance protein signature 14 29 - -
Vimu4g02169 1199 PRINTS Disease resistance protein signature 419 435 - -
Vimu4g02169 1199 PRINTS Disease resistance protein signature 184 198 - -
Vimu4g02169 1199 SUPERFAMILY L domain-like 309 682 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g02169 Vimu-Chr4 23979995 23988212 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g02169 11 678 WRKY Transcription Factor Family AT5G45050 31.571 3.42e-85 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g02169 - - psat:127127957 1611.28