Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g02158 ATGTTCGCGGCGTCTCCGCCACCCTTCGCCGCCGCTACCACCGCCGGCGTTGGTCTCGGCTACGGCATTGCCATCGCCGTCAGCATCCTCGTCCTCATCTCCTCCATCATGCTCGCCTCCTACGCCTGCGTCCGCTTCAAATCAAACTCTCCTCGCACTCGCAACAACACTTATTACGACCAAACGGAACAGAATAACAACATTCACGACTCCGGTGGACCCGAGCCCGTCGTCCTGGGCCTGGAAAAGCCTGCCATCGAGGCCTACCCGAAGATCGTGGTCGGAGAGAGCGGCCGCCTCCCCAGGCCCAACGACAGCGGCTCCTGCGCCATCTGCCTCTGCGACTACCTTCCCAAGGACACCGTACGCTGCGTTCCGAGCTGCTACCACTGCTTTCACGCGGACTGCGTGGACGAGTGGCTGAAGATGAGTGCCACGTGTCCGCTCTGCCGGAACTCCCCGGCGCCATCACCATCGCCGTCACCGACGCCGCTCTCGGAGCTCGTTCCGCTGGCTTTCCACGCCAGGAATAATGTTGTTGCTCGATACAATGCGAAAGAAGCAGTCATGATAGAAGTGGATGCCACCGAGAAGTGGGATGGGTCGTGTGCACTAGTGTTACCCGTTCTAGGGAGAGTTGTTATGGTTAGATTTGTGGAGGACGCTGAGGATTTCAAGCTTGTTGTGGGCAAGAAGAATGATCTTAAGGGAACTAAACATGGTACCCACAAACTACACCTGAACGAGTGGACATTTATGCAGGCGTTTGAGGTGATTTGCAAGGCCTTCGATCTCACTCCCATTCCTCCTTGCTTTCTATACTTCTTCCGCACTCGCCCGTATGTAAGAAGAGGTTAG 858 0.5676 MFAASPPPFAAATTAGVGLGYGIAIAVSILVLISSIMLASYACVRFKSNSPRTRNNTYYDQTEQNNNIHDSGGPEPVVLGLEKPAIEAYPKIVVGESGRLPRPNDSGSCAICLCDYLPKDTVRCVPSCYHCFHADCVDEWLKMSATCPLCRNSPAPSPSPSPTPLSELVPLAFHARNNVVARYNAKEAVMIEVDATEKWDGSCALVLPVLGRVVMVRFVEDAEDFKLVVGKKNDLKGTKHGTHKLHLNEWTFMQAFEVICKAFDLTPIPPCFLYFFRTRPYVRRG 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g02158 285 Pfam Ring finger domain 108 151 IPR001841 -
Vimu4g02158 285 SUPERFAMILY RING/U-box 108 158 - -
Vimu4g02158 285 CDD RING-H2_EL5-like 108 151 - -
Vimu4g02158 285 SMART ring_2 109 150 IPR001841 -
Vimu4g02158 285 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 77 156 IPR013083 -
Vimu4g02158 285 PANTHER RING-H2 FINGER PROTEIN ATL67 10 176 IPR044289 GO:0016567|GO:0016740
Vimu4g02158 285 ProSiteProfiles Zinc finger RING-type profile. 109 151 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g02158 Vimu-Chr4 23870793 23873311 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g02158 15 176 C3H Transcription Factor Family AT5G07040 61.111 3.79e-60 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g02158 - - vra:106761828 323.553