Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g02150 ATGGGGAGAGACTACGACAAGAAAGTCGATGTTTGGAGCTGTGGGGTTATTGTTTACACAATGTTGAGTGGCATTCCACCCTTCTATGGAGATTCTGCTGTAGAAATTTTTGAAGTTGTTTTAAGGGCTAATCTTAGGTTTCCTTCCACAATTTTTAGGTATGTGTTTGTTCAAGCTAAGGATCTTCTTAGGAAGATGATCTGTAGAGATCCCTCTGGACGTATATCTGCACATCAAGCATTGAGACATCTATGGATTTTGAGTACTTCCTGCTCATCTTTCTTGAAGAGTGGACTAAAAGCATATTTAACCCTTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATAATTGTTAAAATCTAA 378 0.3333 MGRDYDKKVDVWSCGVIVYTMLSGIPPFYGDSAVEIFEVVLRANLRFPSTIFRYVFVQAKDLLRKMICRDPSGRISAHQALRHLWILSTSCSSFLKSGLKAYLTLIIIIIIIIIIIIIIIIIVKI 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g02150 125 Pfam Protein kinase domain 3 86 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g02150 125 Gene3D Transferase(Phosphotransferase) domain 1 1 101 - -
Vimu4g02150 125 SUPERFAMILY Protein kinase-like (PK-like) 2 94 IPR011009 -
Vimu4g02150 125 ProSiteProfiles Protein kinase domain profile. 1 86 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g02150 125 PANTHER SERINE/THREONINE-PROTEIN KINASE 4 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g02150 Vimu-Chr4 23805030 23806011 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g02150 3 93 EF-hand Containing Proteins AT1G76040 45.055 2.90e-26 98.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vimu4g02150 Pkinase 1.2e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g02150 - K08794 gmx:548089 142.895