Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g02144 ATGATTGGTGTGAAAGCAGCTTGTGTGATGATGGAAGGAAGATTATCAGGTGTGAGGAAAGGAGCATGGAGTCAAACTGAAGATGAGCTTCTCAGAGAATGCGTGCAACTCTATGGCAAAGGAAAGTGGCATCTTGTTCCTCAAAGAGCAGGGTTGAACAGATGTAGGAAGAGTTGTAGACTGAGATGGTTGAACTATTTTGAAACCAAATATCAACAACAATCAAACGAAAGCTTTGTTGGACGCAAATGGTCTCTAATTGCAGGAAGACTTTTGGGAAGAACTTCAAATGATGTGAAGAATTACTGGAACACCAACAAGCACCACAAAGTACAATCTCACAACAGAGATGAGGAGAACAACAACAACGTTAAAGAATCTGAAAGAACTAAACCCCACCAAGTTATAAAGCCTATGCTTGGAGCTTTCGCAAAATCATCGGCCATGGTGCATGGGAAATTGATGAGAGGAGGTAGGGGTTACGTACGT 489 0.4192 MIGVKAACVMMEGRLSGVRKGAWSQTEDELLRECVQLYGKGKWHLVPQRAGLNRCRKSCRLRWLNYFETKYQQQSNESFVGRKWSLIAGRLLGRTSNDVKNYWNTNKHHKVQSHNRDEENNNNVKESERTKPHQVIKPMLGAFAKSSAMVHGKLMRGGRGYVR 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g02144 163 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 81 111 IPR017930 -
Vimu4g02144 163 FunFam Myb transcription factor 20 70 - -
Vimu4g02144 163 SUPERFAMILY Homeodomain-like 17 103 IPR009057 -
Vimu4g02144 163 Gene3D - 20 72 - -
Vimu4g02144 163 MobiDBLite consensus disorder prediction 107 132 - -
Vimu4g02144 163 MobiDBLite consensus disorder prediction 110 132 - -
Vimu4g02144 163 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 71 IPR017930 -
Vimu4g02144 163 ProSiteProfiles Myb-like domain profile. 15 67 IPR001005 -
Vimu4g02144 163 Pfam Myb-like DNA-binding domain 20 67 IPR001005 -
Vimu4g02144 163 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 16 130 - -
Vimu4g02144 163 CDD SANT 22 67 IPR001005 -
Vimu4g02144 163 SMART sant 19 69 IPR001005 -
Vimu4g02144 163 Gene3D - 77 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g02144 Vimu-Chr4 23734744 23735551 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g02144 11 151 MYB Transcription Factor Family AT1G66390 48.408 2.96e-39 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vimu4g02144 Myb_DNA-binding 2.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g02144 - K09422 pvu:PHAVU_008G038600g 206.068