Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g02142 ATGTATTCGTCTGTCTTCAACATTCTCCGGCCTATACTCCGGTGTGTCTTCAACATTCTCCGCCGTATCTTCCGGTGTGTCGAAGAACCAGACCGTATCATGTCCGGCATGTCCGAGGGTATGACCGTGTCTCACCCAACAGCCCCTATCGGACCTTCCGTCGCGTCCGACGCCATCATCCATCACACCCCTTCTTCATCTCATGCATACGATGTATTTGTGAGCTTCCGTGGTGAAGACACGCGCAACAACTTCACTAGTTTTCTCTTTGGAGCTCTTCGTCGACAAGGCATTCTTGCCTTCAAAGATGACCAATGTATCAAAAAAGGTGATTTCATAGCACCCGAGCTTCTACAAGCCATTCAAGGCTCTCAAGTTTTTGTTGTTGTCTTATCAAAGAACTATGCTTCCTCCACTTGGTGCTTGCGTGAACTGGTAGAGATACTTAATTGCTGTGAAACTTCAGCAAGACCTCTTATACCTATATTTTATGATGTTGAGCCTACGACGGTTCGCAATCAGAAAGGATGTTATGAGAAAGCATTTGCAGAACACGAAAACAGATTCAGAGAAGATAAGGTGAAGATGGAGGAAGTTCAAACATGGAAAGAAGCTCTCAGAAAAGTGGCCGATATCTCTGGTTCGGAAATCGGAAATAAGGCACAAAATGAACAGATTGAAAAAATTGTTCGAGAGATAACAAATAATTTGAGACCAAAAATTTTAAATCTTCCAAGGGATGAACTAGTTGGAATAGAGGCTCGAGTTCAAGACTTAGGAAATATATTGCATTTCGACCTCCATAATGATGTTCGAGTTGTCGGAATAAGTGGGATGGGTGGCATAGGAAAGACAACTCTTGCTCGAGCTTTATATGAAAGAATTTGTCATCAATATAATTATCGTTGTTTTATTGATGATGTAAGCAAAATATTTCTAGATTCTCATTCGTTGGGCTTACAAAAGCAATTAATTTCTCAGACTCTAAATGAGAAAAATGTAGAGATTTGCAATGTTATCGAGGGAACATGTTTGGTGCAGTCCAAACTGAACAATGCTAAGGCACTTATAGTTTTTGACAACGTTGATGAAGTTCGACAACTGAGGATATTTAGCGGAAATAGAGACAATTTGTTGCGAGAATGTTTAGGTAAAGGGAGCAGAATCATCATAGTTTCTAGAGATGAACAAATATTGAAGATACATGGAGTGGATGATATTTATCAAGTTCGACAGTTGAATTGGAAAGATGCTATCCAACTATTTTGTAGAAATGCTTTCAAAGTTAATTACATTTTGAGCGATTATGAAAAGTTGGCAGATGAGATACTATTACATGTTGAAGGACATCCCTTGGCAATTGAAACAATTGGGTCATCTTTGTTTGGCCGAAGTTTGTCACAATGGAAAAGTGTATTGGAAGGGCTAAAAGAAAATAAAAGTAAAAATATTATGGATATTTTGCGCATAAGTTATATTCAACTGGAAGAAAAATACAAACAAACATTTTTGGATATTGCTTGCTTCTTCAATTCTTATGATGAAGAAAATGTGAAGGAAATTCTAAATTTCCGTGGATTTCATCCTGAAGATAGCATACAAGTTCTCATTGATAAATCACTCATTACCAGAGATTTCGATGGGAGAATACATATGCATAGCTTGCTAGTGGATTTGGGAAGGTGTATTGTTCGGGAAGTATCACCTAAAGAGCCTATAAAGTGGAGTAGGTTGTGGACACGCAAAGATCTCCGTAATGCCATGTCAGAGAACGAGGCAACTCGAAACCTTGAGGCAATAGTTCTTGAGAATCATGTTGTAATCCGAGATGAAACAATCAGGGCAGATGGTCTATCAAAAATTAAACACCTGAAATTGCTTTTTGTTAAGAACTTGAACGTGAACTTTTCGGGAAGTTTGAGTCATCTTTCAGATGAACTAGGATATCTTGTTTGGTACGAATATCCATTTGAGTGTTTGCCTCAAAGTTTTCAGCCACACAACCTACTTGAGTTAGTCTTGTATGGAAGCAGTATTCAACGACTATGGGAAGGCAAAAAGCCGTTACCCAATTTAAAGCGTTTGGATCTCTCTCATTGCAAAAGTTTAGTTGAGATGCCAGATGTAGCAGAGGCCCTAAATCTTGAATGGATAATTCTTTCAGGATGCGTGCGGCTCCAAAAACTCAATCCATTGATTGGGAGTCTGAGAAAGCTTGTTCTTTTGGATTTGACATACTGCGAAAAACTATATTGCAAGGGATTGAAATATTTGCCTGATCTCCCTTCACGAACTGTCTTGCCCTCAGAACCTTGCACATCGAGATTCCCATCTTCAATATTGAAGTCCCATCTTACAAGTCTTAAATTTACAGGATTAATTATTTTCGGGTGCCCAGAATTAGTTGAGATTGAACAGCTTACTACAAAGAGTTTTTCCTGGACAATTCAAATTATTGAGGCGACCTACCAATTGCCATTCCCTGAAACTTATATGCCTGATAGTATTATGCCTGGAAGTCAAATACCGAGCTTGTTCAACAATGAGTTTGTGAACGGAGACATAGAAAACCTCGAAGAATACCTGGGCGAAGAATACCTAACCATTGATCGACCTCCTGTTCCGCATGACAATAATTTCATTGGTGTTTTGTATTGCGTAATATTTTGTCTATACAATATTGAACAAATTCCAATGAATTTTGGAAGAGATCACATGTGGTTACATTATGAAGAGCTTAATATGGACCGAAGTGGTATTTATCCTTGTCTGACGCGGATTATCGAATTGTTGGGTCACACTACTTATTCTAGTACGGTGTATGTGAAGAAATTTCAGTATCGCTGGGTAAATGAGCAAGACCTAATTAATCTCAAAATGATGCATTGTGCAAATTTCACAGCTGGGAAGCGCAAGATTTCTGCAATTGAGGAAAACGGTTAG 2943 0.3877 MYSSVFNILRPILRCVFNILRRIFRCVEEPDRIMSGMSEGMTVSHPTAPIGPSVASDAIIHHTPSSSHAYDVFVSFRGEDTRNNFTSFLFGALRRQGILAFKDDQCIKKGDFIAPELLQAIQGSQVFVVVLSKNYASSTWCLRELVEILNCCETSARPLIPIFYDVEPTTVRNQKGCYEKAFAEHENRFREDKVKMEEVQTWKEALRKVADISGSEIGNKAQNEQIEKIVREITNNLRPKILNLPRDELVGIEARVQDLGNILHFDLHNDVRVVGISGMGGIGKTTLARALYERICHQYNYRCFIDDVSKIFLDSHSLGLQKQLISQTLNEKNVEICNVIEGTCLVQSKLNNAKALIVFDNVDEVRQLRIFSGNRDNLLRECLGKGSRIIIVSRDEQILKIHGVDDIYQVRQLNWKDAIQLFCRNAFKVNYILSDYEKLADEILLHVEGHPLAIETIGSSLFGRSLSQWKSVLEGLKENKSKNIMDILRISYIQLEEKYKQTFLDIACFFNSYDEENVKEILNFRGFHPEDSIQVLIDKSLITRDFDGRIHMHSLLVDLGRCIVREVSPKEPIKWSRLWTRKDLRNAMSENEATRNLEAIVLENHVVIRDETIRADGLSKIKHLKLLFVKNLNVNFSGSLSHLSDELGYLVWYEYPFECLPQSFQPHNLLELVLYGSSIQRLWEGKKPLPNLKRLDLSHCKSLVEMPDVAEALNLEWIILSGCVRLQKLNPLIGSLRKLVLLDLTYCEKLYCKGLKYLPDLPSRTVLPSEPCTSRFPSSILKSHLTSLKFTGLIIFGCPELVEIEQLTTKSFSWTIQIIEATYQLPFPETYMPDSIMPGSQIPSLFNNEFVNGDIENLEEYLGEEYLTIDRPPVPHDNNFIGVLYCVIFCLYNIEQIPMNFGRDHMWLHYEELNMDRSGIYPCLTRIIELLGHTTYSSTVYVKKFQYRWVNEQDLINLKMMHCANFTAGKRKISAIEENG 980
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g02142 980 PRINTS Disease resistance protein signature 687 703 - -
Vimu4g02142 980 PRINTS Disease resistance protein signature 447 461 - -
Vimu4g02142 980 PRINTS Disease resistance protein signature 273 288 - -
Vimu4g02142 980 PRINTS Disease resistance protein signature 349 363 - -
Vimu4g02142 980 SUPERFAMILY Toll/Interleukin receptor TIR domain 62 214 IPR035897 -
Vimu4g02142 980 SUPERFAMILY L domain-like 618 820 - -
Vimu4g02142 980 Pfam NB-ARC domain 268 484 IPR002182 GO:0043531
Vimu4g02142 980 FunFam Disease resistance protein (TIR-NBS-LRR class) 66 239 - -
Vimu4g02142 980 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 232 506 IPR027417 -
Vimu4g02142 980 Gene3D - 412 496 IPR042197 -
Vimu4g02142 980 Gene3D Ribonuclease Inhibitor 592 814 IPR032675 -
Vimu4g02142 980 SMART till_3 69 212 IPR000157 GO:0007165
Vimu4g02142 980 Pfam TIR domain 69 242 IPR000157 GO:0007165
Vimu4g02142 980 Gene3D - 53 210 IPR035897 -
Vimu4g02142 980 ProSiteProfiles TIR domain profile. 68 237 IPR000157 GO:0007165
Vimu4g02142 980 SUPERFAMILY "Winged helix" DNA-binding domain 483 585 IPR036390 -
Vimu4g02142 980 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 70 814 IPR044974 GO:0006952
Vimu4g02142 980 Gene3D - 220 408 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g02142 Vimu-Chr4 23695904 23700105 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g02142 65 830 WRKY Transcription Factor Family AT4G12020 28.463 2.76e-69 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g02142 - - vra:106760531 1211.82