Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g02141 GATCAAAATGAAGAGACTGAAAAAATTGTTAAAGAGATAAAAAATAATTTGAGACCAAAAATTTTAAATCTTCCAAGGGATGAACTAGTTGGGATAGAGGATCGAGTTAAAGACTTAGGAAATATTTTGCGTTTCGACCTCCATAATGATGTTCGAGTTGTCGGAATAAGTGGGATGGGTGGCATAGGAAAGACAACTCTTGCTCGGGCTTTATATGAAAGAATTTGTCATCAATATGATCATCGTTGTTATATTGATGATGTAAGCAAAATATTTCTAGATTCTCGTTCGTTGGGCTTACAAAAGCAATTAGTTTCTCAGACTCTAAATGAGAAAAATGTAGAGATTTGCAATGTTATCGATGGAACATGTTTGGTGCAGTCCCAACTTAATGCTAAGACAATTATAGTTTTTGACAACGTTGATGAAGTTCAACAACTGAGGATATTTAGCGGAAATAGAGATAATTTGTTGCGAGATTGCTTAGGTAAAGGGAGCAGAATCATCATAGTTTCTAGGGATGAACAATTATTGAAGATACATGGAGTGGATGATATTTATCAAGTTCGACCATTGAATTGGGGACATGCTATCCAACTATTTTGTAGAAATGCTTTCAAAGATAATTATAGTTTGAGAGATTATGAAAAGTGGGCACTCGGGATACTATCACATGTTGAAGGGCATCCCTTGGCAATTGAAACAATTGGGTCGTCTTTGTTTGGCCGAAGTTTGTCACAATGGAAAAGTGCAACTGGAAACCTTGAGGCAATAGTTCTTACACCTCACATTGAAATCCCAGGTCTCGAAACAATAAAGGCGGATGGTCTATCAAAAATTAAAAACTTGAAATTGCTTGATGTTGGGTACGTGAAGTTTTCGGGAAGTCTGAGTCATCTTTCGAATGAACTAGGATATCTTAATTGGTACAGATATCCGTTTGAGTATTTGCCTCAAAGTTTTCAGCCACACAAACTAGTTCAGTTAATCCTGCGTGGGAACAATATTCAACGACTGTGGGAAGGCACAAAGCCATTACCCAATTTGAAGAGATTGGATCTCTCTTTTTGCGAAAGTTTAGTTGAGATGCCAGATGTAGCAGAGGCCCTAAATCTTGAATGGATAAGTTTTGAAGGATGCGTACAGCTCCAAGAACTCAATCCATCGATTGGGAGTATGAGAAAGCTTGTTCTTTTGAATTTGAGATACTGCAGAAAACTACTAATCTTATCCAATACTATATTGAGCCTGAATTACCTTAAATATCTGTATGTCAGAGGTTGTTCAATAATAGGTAGAAATTGCTTACTAGATGAAACAAGGAACACAGAGCACTTGATCAGCTGTTTGTCGCCCTCCTCTCCTCTCTCTTGTTTGTGTGAACTTGATCTAAGCTTCTGTAACTTAGTTCAAATTCCTGATTACATTGGAAAGTTACGTTGCTTAAAGAGCCTAAATTTACAGGGAAACAATTTTGATAGATTGCCTAACCTCAAGGACCTTTTGAGACTGTATTTTTTAAACTTACAGGATTGCAATCAATTGAAATACTTGCCTGATCTCCCTTCAAAAACTGTCTTGCCCTCAGAACCTTTCACGTCGAGATTCCGATCTTCAATGCATAATACCAATTTTACAAGTGTTGAACGAACAGGATTAATCATTTACGGCTGTCCAGAGTTAGTTGAGATTGAAGAGTGCATTAGAAAGAGTTTTTCATGGACAATTCAAATTATTAAGGCGACCTACCAATTGTTTTTGTCTGAAACTTATATGCCTCAAAGTATTATGCCTGGAAGTCAAATACCGAGCTTGTTCAACAATGAGTTTGTCAACGGAGACATAAAATACGTGGACGGGGACATAGAATACCTGGACGAAAAATACCTAATAGTTGATCCACCTCCCGTTTCGCATGACAATAATTTGATTGGTGTTTTATGTTGCGTAATATTTCGTCTATACAATAATGAACAAATTCCAATGGATTTTGAAATAGATCACATGTGGTTACATTATCAAAAGGTTTCTATGGACGCACGTGGTTTTCGTCCTTGTCGTTTCAGTTTGACGCAGATTATCAAATTGTTGGGTTACTTTACTTGTTTTAGTACGGTGGATGTGAAGAAATTTCAGTATCGCTGGGTAAATGAACGAGACCTAATTAACCTCAAAATGACATCTCGGAAGCGCAAGATTTCCGTAATTGAGGAAAACGGTTAG 2223 0.3702 DQNEETEKIVKEIKNNLRPKILNLPRDELVGIEDRVKDLGNILRFDLHNDVRVVGISGMGGIGKTTLARALYERICHQYDHRCYIDDVSKIFLDSRSLGLQKQLVSQTLNEKNVEICNVIDGTCLVQSQLNAKTIIVFDNVDEVQQLRIFSGNRDNLLRDCLGKGSRIIIVSRDEQLLKIHGVDDIYQVRPLNWGHAIQLFCRNAFKDNYSLRDYEKWALGILSHVEGHPLAIETIGSSLFGRSLSQWKSATGNLEAIVLTPHIEIPGLETIKADGLSKIKNLKLLDVGYVKFSGSLSHLSNELGYLNWYRYPFEYLPQSFQPHKLVQLILRGNNIQRLWEGTKPLPNLKRLDLSFCESLVEMPDVAEALNLEWISFEGCVQLQELNPSIGSMRKLVLLNLRYCRKLLILSNTILSLNYLKYLYVRGCSIIGRNCLLDETRNTEHLISCLSPSSPLSCLCELDLSFCNLVQIPDYIGKLRCLKSLNLQGNNFDRLPNLKDLLRLYFLNLQDCNQLKYLPDLPSKTVLPSEPFTSRFRSSMHNTNFTSVERTGLIIYGCPELVEIEECIRKSFSWTIQIIKATYQLFLSETYMPQSIMPGSQIPSLFNNEFVNGDIKYVDGDIEYLDEKYLIVDPPPVSHDNNLIGVLCCVIFRLYNNEQIPMDFEIDHMWLHYQKVSMDARGFRPCRFSLTQIIKLLGYFTCFSTVDVKKFQYRWVNERDLINLKMTSRKRKISVIEENG 740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g02141 740 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 277 429 IPR044974 GO:0006952
Vimu4g02141 740 Gene3D Ribonuclease Inhibitor 443 610 IPR032675 -
Vimu4g02141 740 Gene3D Ribonuclease Inhibitor 266 442 IPR032675 -
Vimu4g02141 740 ProSiteProfiles Leucine-rich repeat profile. 481 502 IPR001611 GO:0005515
Vimu4g02141 740 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 12 259 IPR027417 -
Vimu4g02141 740 Gene3D - 192 265 IPR042197 -
Vimu4g02141 740 Gene3D - 11 184 IPR027417 -
Vimu4g02141 740 Pfam NB-ARC domain 48 256 IPR002182 GO:0043531
Vimu4g02141 740 SUPERFAMILY L domain-like 270 590 - -
Vimu4g02141 740 PRINTS Disease resistance protein signature 128 142 - -
Vimu4g02141 740 PRINTS Disease resistance protein signature 344 360 - -
Vimu4g02141 740 PRINTS Disease resistance protein signature 53 68 - -
Vimu4g02141 740 PRINTS Disease resistance protein signature 226 240 - -
Vimu4g02141 740 Pfam Leucine Rich Repeat 325 344 IPR011713 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g02141 Vimu-Chr4 23642292 23645436 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g02141 295 522 WRKY Transcription Factor Family AT5G45050 31.687 8.36e-20 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g02141 - - vum:124847783 670.233