LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu4g02140	CCACAAGATGAACAGATTGAAAAAATTGTTCAAGAGATAATAAATAATTTGAGACCAAAAATTTTAAATCTTCCAAGGGATGAACTTGTTGGGATAGAGGCTCGACTTCAACACTTACAAAATATTTTGCGTCTCGACCTTCCTAATGATGTTCGAATTGTCGGAATAAGTGGGATGGGTGGCATAGGAAAGACAACTCTTGTTCGGGCTTTATATGAAAGAATTTGTCATCAATATAATCATTGTTGTTTTATTGATGACGTAAGCAAAATATTTGTAGATTCTCGTTCGTTGGGCTTACAAAAGCAATTAATTTCTCAGACTCTAAATGAGAAAAATGTAGAGATTTGCAATGTTATCGAGGGAACATGTTTGGTGCAGTCCAAACTGAACAATGCTAAGGCACTTATAGTTTTTGACAACGTTGATGAAGTTCAACAACTGAGGATGTTTAGCGGAAATAGAGACAATTTGTTGCGAGAATGCTTAGGTGGAGGGAGCAGAATCATCATAGTTTCTAGGGATGAACAAATATTGAAGATACATGGAGTGGATGATATTTATCAAGTTCGACCGTTGATATGGAAAGATGCTATCCAACTATTTTGTAGAAATGCTTTCAAAGTTAATTACATTTCGAGCGATTATGAAAAGTTGGCATATGAGATACTATCACATGTTGAAGGGCATCCCTTGGCAATTGAAACAATTGGGTCGTCTTTGTTTGGCCGAAGTTTGTCACAATGGGAAAGTGTATTGGAAGGGCTAGAAGAAAATAAAAGTAAAAATATTATGGATATTTTGCGCCTAAGTTATAATCAACTGGAAGAAAAATACCAAAAAACATTTTTGGATATTGCTTGCTTCTTCAATTCTTATAAAGAAGAAGATGTGAAGGAAATTCTAAATTTCCGTGGATTGCATCCTGAAGATAGCATACAAGTTCTCATTGATAAATCACTCATGACCATAGAACGAGGTGAAATACATATGCATAGCTTGTTAGAGGATTTGGGGAGGTGTATTGTTCGGGAAGTATCACCTAAAGAGCCTATAAAGTGGAGTAGGTTGTGGACACGCAAAGATCTCCATGATGCTATGTCAGAGAACGAGGCAACTGGAAACCTTGAGGCAATAGTTCTTAGATATGACTGGGAGGGGGATGATGTTGAAATCCCAGATGAAACAATCAAGGCGGATGGTCTATCAAAAATTAAACACCTGAAATTGCTTTTTGTTGGGCACGTGAAGTTTTCGGGAAGTCTGAGTCATCTTTCGGATGAACTAGGATATCTTGTTTGGTATGAATATCCGTTTAAGTGTTTGCCTCAAAGTTTTCAGCCACACAAACTAGTTGAGTTAAGCCTGTGTGAGAGCAGTATTCAACGACTGTGGGATGGAACAAAGTCGTTACCCAATTTGAAGCGTTTGGATCTCTCCTTTTGCAAAAGTTTAGTTGAAATGCCAGATGTAGCAGAGGCCCTAAATCTTGAATGGATAATTCTTGAAGGATGCGTACGGCTCCGAAAACTCAATCCATCGATTGGGAGTCTGAGAAAGCTTTTTCTTTTGAATTTGAGAGACTGCAAAAAACTAGTAATCTTATCCAATACTATATTGGGCCTGAATTCTCTTAAAAATCTGTATGTTAGTGGTTGTTCAATAATAGGTAGAAATTACTTACTAGATGAAACAAGAAACACAGAGCACATGATCAACTGTTTGTCGCCCTCCTCTCCTTTCTCTTGTTTGTGTGAACTGGATCTAAGCTTCTGTAACTTAGTTCAAATTCCTGATTACATTGGAAAATTAAGTTACTTAGTTAGCCTAAATTTAGAGGGAAACAAATTTGTTAGATTGCCTAACCTCAAAGACCTTTTGAGACTGTATTATTTAAACTTACAGGACTGCAAGCAATTGAAATACTTGCCTGATCTCCCTTCAAGAACTGTCTTGCCCTCGGAACCTTTTACGGTATTCCCATCTTCAATATATTGTTCGCCTCATTCTTGGCATGAGAAAGATTTTTATGCTAAAAGTTTAGGATTAATCATTTTCGGGTGCCCAGAATTAGTTGAGATTGAAGAGTGCATTAGAAAGAGTTTTTCATGGGCAATTCAAATTCTTGAGGCGACCTACCACACGGATACCTACCTATGGCCATTCCCTAAAAGTATTATACCTGGAAGTCAAATACCAAGTTTGTTCAACAATGAGTTTGTGAACGTGGACATACAATACATGGACAAAAAAAACCTACACATTGATCCACCTCCCGTTCCGCATGACAATAATTTGATTGGTGTTTTGTGTTGCGTAACATTTCGTCTATACAATCAACAAATTCCAATGGACTTTAGAAGAGATCACATCTGCTTATATTATGATGAGGTTTGTATGGTCGGAGGTAGTATTCGACCTAGTGGTTTCAGTTGTAGCTGGATTAACTCATTTTTGGGTTACGGGAAAATTCTTACGGCGGATGTGAAGAAATTTCAGTATCGCTGGATAAATAAACAAGACCTAATTAACCTCAAAATGATGCAATGTGCAGATTTGACAGCTCGGAAACGCAAGATTTCCGTAATTGAGGAAAACGGTGAGCTACAGTGA	2613	0.3739	PQDEQIEKIVQEIINNLRPKILNLPRDELVGIEARLQHLQNILRLDLPNDVRIVGISGMGGIGKTTLVRALYERICHQYNHCCFIDDVSKIFVDSRSLGLQKQLISQTLNEKNVEICNVIEGTCLVQSKLNNAKALIVFDNVDEVQQLRMFSGNRDNLLRECLGGGSRIIIVSRDEQILKIHGVDDIYQVRPLIWKDAIQLFCRNAFKVNYISSDYEKLAYEILSHVEGHPLAIETIGSSLFGRSLSQWESVLEGLEENKSKNIMDILRLSYNQLEEKYQKTFLDIACFFNSYKEEDVKEILNFRGLHPEDSIQVLIDKSLMTIERGEIHMHSLLEDLGRCIVREVSPKEPIKWSRLWTRKDLHDAMSENEATGNLEAIVLRYDWEGDDVEIPDETIKADGLSKIKHLKLLFVGHVKFSGSLSHLSDELGYLVWYEYPFKCLPQSFQPHKLVELSLCESSIQRLWDGTKSLPNLKRLDLSFCKSLVEMPDVAEALNLEWIILEGCVRLRKLNPSIGSLRKLFLLNLRDCKKLVILSNTILGLNSLKNLYVSGCSIIGRNYLLDETRNTEHMINCLSPSSPFSCLCELDLSFCNLVQIPDYIGKLSYLVSLNLEGNKFVRLPNLKDLLRLYYLNLQDCKQLKYLPDLPSRTVLPSEPFTVFPSSIYCSPHSWHEKDFYAKSLGLIIFGCPELVEIEECIRKSFSWAIQILEATYHTDTYLWPFPKSIIPGSQIPSLFNNEFVNVDIQYMDKKNLHIDPPPVPHDNNLIGVLCCVTFRLYNQQIPMDFRRDHICLYYDEVCMVGGSIRPSGFSCSWINSFLGYGKILTADVKKFQYRWINKQDLINLKMMQCADLTARKRKISVIEENGELQ	870

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu4g02140	870	Pfam	NB-ARC domain	45	274	IPR002182	GO:0043531
	Vimu4g02140	870	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	5	554	IPR044974	GO:0006952
	Vimu4g02140	870	ProSiteProfiles	Leucine-rich repeat profile.	606	627	IPR001611	GO:0005515
	Vimu4g02140	870	Gene3D	-	193	276	IPR042197	-
	Vimu4g02140	870	Gene3D	Ribonuclease Inhibitor	389	559	IPR032675	-
	Vimu4g02140	870	PRINTS	Disease resistance protein signature	227	241	-	-
	Vimu4g02140	870	PRINTS	Disease resistance protein signature	129	143	-	-
	Vimu4g02140	870	PRINTS	Disease resistance protein signature	53	68	-	-
	Vimu4g02140	870	PRINTS	Disease resistance protein signature	469	485	-	-
	Vimu4g02140	870	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	11	286	IPR027417	-
	Vimu4g02140	870	Gene3D	Ribonuclease Inhibitor	563	652	IPR032675	-
	Vimu4g02140	870	Gene3D	-	8	185	IPR027417	-
	Vimu4g02140	870	SUPERFAMILY	L domain-like	335	647	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu4g02140	Vimu-Chr4	23627823	23630868	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu4g02140	28	647	WRKY Transcription Factor Family	AT5G45050	31.288	2.23e-69	248

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu4g02140	-		-	vra:106760531	1258.05