Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g02138 ACCGAGAAGGCTTTTTTGAAGCAACCAAAAGTGTTCCTCAGTTCGAAGAAAACTGGGAAGGGGAAGAGACCAGGCAAAGGTGGAAACCGCTTTTGGAAATCCATTGGACTTGGATTTAAGACTCCCAGGGAAGCCATCGAAGGAACTTTTATTGACAAGAAGTGCCCCTTCACTGGCAATGTCTCCATCCGTGGCCGTATCCTTGCTGGAACATGCCACAGTGCTAAGATGAACAGGACAATCATTGTTAGGAGGAATTATCTCCATTTCATAAAGAAGTACCAGAGGTACGAGAAGAGGCACTCAAATATCCCTGCTCATATATCACCTTGTTTCCGTGTGAAGGAAGGAGATCATGTCATTATTGGTCAATGCAGGCCTCTCTCTAAAACAGTGAGGTTCAATGTATTGAAAGTGATCCCTGCTGGATCTTCTAGCGGTGCTAAGAAGGCATTTACTGGGATGTGA 468 0.4509 TEKAFLKQPKVFLSSKKTGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTFIDKKCPFTGNVSIRGRILAGTCHSAKMNRTIIVRRNYLHFIKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSGAKKAFTGM 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g02138 155 FunFam 40S ribosomal protein S11 1 154 - -
Vimu4g02138 155 Pfam Ribosomal protein S17 70 138 IPR000266 GO:0003735|GO:0005840|GO:0006412
Vimu4g02138 155 Pfam Ribosomal_S17 N-terminal 1 68 IPR032440 -
Vimu4g02138 155 PANTHER 40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER 6 146 IPR000266 GO:0003735|GO:0005840|GO:0006412
Vimu4g02138 155 SUPERFAMILY Nucleic acid-binding proteins 64 143 IPR012340 -
Vimu4g02138 155 Gene3D - 1 154 - -
Vimu4g02138 155 ProSitePatterns Ribosomal protein S17 signature. 117 129 IPR019979 GO:0003735|GO:0005840|GO:0006412
Vimu4g02138 155 PRINTS Ribosomal protein S17 family signature 117 127 IPR000266 GO:0003735|GO:0005840|GO:0006412
Vimu4g02138 155 PRINTS Ribosomal protein S17 family signature 84 107 IPR000266 GO:0003735|GO:0005840|GO:0006412
Vimu4g02138 155 PRINTS Ribosomal protein S17 family signature 127 134 IPR000266 GO:0003735|GO:0005840|GO:0006412
Vimu4g02138 155 NCBIfam 30S ribosomal protein S17 50 139 IPR028333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g02138 Vimu-Chr4 23603549 23604868 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g02138 1 155 Cytoplasmic Ribosomal Protein Gene Family AT5G23740 89.677 1.26e-94 269
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g02138 K02949 - gmx:547984 301.597