Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g02137 ATGGGTCGTGCAAGAGTGACCTTGAAACCAATACCTAATAAAAGACATCGAAAAACAACATTTTTACGCAGAAAAACGGGACTCATAAAAAAAGTCTCTGAATTTTGCATCATGTGTCAAGCTAAAGCGTGTTTGATTGTGTACGATGATGACAGCGACAATGTTGGACCAGAAATCTGGCCTCAAGATTCTGCAGAGGTACAATCCATCATACAAAATTATGTGTGTCAAAGAACTGAGAAATCTCCCAAGACCTTTGAGATTCAAGACTTTTTCGACAACAGAAAGAACATGATTGAAGCTGAGATTTCCAAATTGCACAAACAAGAAAGAGAGATCATGTATCCAACATGGGATCAGAGTTTGAACAACATGGATAAGGAGCAACTGTGGGCTGTCCTTGCTGATGTGAATGCTAAGATTGGAGCCTGTGATCAGAGAATCGCCATGTTGAAAAACAAGAATAATCAAGATCAAGAAATCAGCATCGATGTCATGGAAAATATGTCTCATCAGCAACCAAAACCAAGTGTTTCTCATTCGAGCCAACTAAATTTCATGTGTCAGAAGAACCGACAACAGCAAGGGATGTCACTTGAAACATTGATGTCAGTTGATGAAAAATATGATCAGGTGGTGGGTTTTGCTGATCAAGTTGGTGTGCCTCTAGATTCGACATTTCAGGTTGGTGGAGTTTCTGACCACCATGGAATTAACATGATGAGAAACATTGAACAAGGTGATGCTTTCTTTCGTTGCATGCCAAACATGGTTGCTGAGAGAACTACCTCGTCACAACCAAGTCAACTCAGTTTCATGCAGAACAAATCCCACGTTGGTGTTCCTCCAAATTCAACTGATCAATTTGGTGAGTCTTTGAAGTGGTTTAATCAATTTGATGAGTTTGAGTGGCTTAAAGAATCCAATGGGACAAACGATCTGTCAAATTCAGTTCTTGGTAATTTTGTGGATTGGACCAGTCAACCACAGTTTTCTACCTTGCAGTTGCAGGAGAAAAGTCATGTTCAATCTCAGAATGAGCAACAAGAAGTAGATTTGCCTCCATTGCCACCTTCACTGTTTTATCAATAA 1092 0.3974 MGRARVTLKPIPNKRHRKTTFLRRKTGLIKKVSEFCIMCQAKACLIVYDDDSDNVGPEIWPQDSAEVQSIIQNYVCQRTEKSPKTFEIQDFFDNRKNMIEAEISKLHKQEREIMYPTWDQSLNNMDKEQLWAVLADVNAKIGACDQRIAMLKNKNNQDQEISIDVMENMSHQQPKPSVSHSSQLNFMCQKNRQQQGMSLETLMSVDEKYDQVVGFADQVGVPLDSTFQVGGVSDHHGINMMRNIEQGDAFFRCMPNMVAERTTSSQPSQLSFMQNKSHVGVPPNSTDQFGESLKWFNQFDEFEWLKESNGTNDLSNSVLGNFVDWTSQPQFSTLQLQEKSHVQSQNEQQEVDLPPLPPSLFYQ 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g02137 363 ProSiteProfiles MADS-box domain profile. 1 50 IPR002100 GO:0003677|GO:0046983
Vimu4g02137 363 SUPERFAMILY SRF-like 1 75 IPR036879 GO:0003677|GO:0046983
Vimu4g02137 363 CDD MADS_SRF_like 2 74 IPR033897 GO:0000981|GO:0000987|GO:0045944
Vimu4g02137 363 SMART madsneu2 1 62 IPR002100 GO:0003677|GO:0046983
Vimu4g02137 363 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Vimu4g02137 363 Gene3D - 13 99 IPR036879 GO:0003677|GO:0046983
Vimu4g02137 363 PANTHER MADS BOX PROTEIN 3 138 - -
Vimu4g02137 363 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vimu4g02137 363 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vimu4g02137 363 MobiDBLite consensus disorder prediction 342 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g02137 Vimu-Chr4 23601056 23602147 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g02137 1 141 Type I MADS-box Gene Family AT5G55690 33.793 2.22e-20 88.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vimu4g02137 SRF-TF 1.4e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g02137 - - var:108332731 619.002