Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g02128 ATGTATGGGAGAACTGCTTGCCAACTTGTGAAAGAATTTGCAAGCGGAGATAAGGGCCAGCTTGTGTCATTCAATAGTGACTTGTTTCAACAAGTAGTTGCAGAATGCAGTCAACATCTCCTTGAACTGCAGTCCCTGATAAGGAAGATGGAGGAAGAACGTTTGGATATCCAAACAGTAAGAAATGCAGATTATTACGGAGCGCTTATTCATCATCTTACTTTAGTCCGAAACAAACGTTGCCTAATGGCTTATGTGTATAATCGAGCAGAAATTATACGGAACTTATTATGGAAGATAGGGCATGTGCTTCCTCAAGAAATTGAAGAGAAGCTTTCTCATGCGGAGGGAGAATATTTCAAGAAGCATTCTGCAGCATTGAAATATTATATGTCGAAAGTGATGGTTGATCTGACTGTGGGCCAAATGGAGGAACTATCTGGTTGA 447 0.4049 MYGRTACQLVKEFASGDKGQLVSFNSDLFQQVVAECSQHLLELQSLIRKMEEERLDIQTVRNADYYGALIHHLTLVRNKRCLMAYVYNRAEIIRNLLWKIGHVLPQEIEEKLSHAEGEYFKKHSAALKYYMSKVMVDLTVGQMEELSG 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g02128 148 Coils Coil 33 63 - -
Vimu4g02128 148 PANTHER PARTNER OF SLD5 1 140 IPR005339 GO:0000811|GO:0006260
Vimu4g02128 148 SUPERFAMILY GINS helical bundle-like 1 140 IPR036224 -
Vimu4g02128 148 Gene3D - 1 134 - -
Vimu4g02128 148 Pfam GINS complex protein 44 116 IPR021151 -
Vimu4g02128 148 CDD GINS_A_psf1 3 134 IPR005339 GO:0000811|GO:0006260
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g02128 Vimu-Chr4 23550646 23553903 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g02128 1 140 Core DNA Replication Machinery Family AT1G80190 62.238 8.42e-62 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g02128 K10732 - qsu:112021696 225.713