Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g02121 ATAAGTTTTGTGTGGGCCTTTTCTCTCTCTCCTTTCTTATGCAACTTGAAGATTATTATAATTTTTGCAATTTCTTTCTTGTCTTCTGAATTTTGTAGGGTTCTTTGTAAGTTCTTTGCTCATGGAGCCTGTTTGAAAGGGGAGCATTGTGAATATTCTCATGACTGGAAAGATCCTCCAAATAATATATGCACATTTTATCAGAAAGGAGTCTGTGCTTATGGTAGTCGCTGCAGATATGATCACATCAAAGCTTCTCAAGCGCAATCTTCCATTCCATCTTCTTCAGCAATTGAACACCATACTCTGGTTTCAGATACTGGTGCTTTCGGAAATATTATAAGTACTTCAAATGGTGTTGGTACGGCTGCAGAGTTGTCTCTTTCCAGTAGTCCGTACATTCTTCCTAGTGAACCGGCTTGGAATCATGAACTGGTTTGGAATCCAGAAATTGAGTATTATGAAATTTTAGGGGAAGACAATGTTGGTCAATCCATAATCACTTCACCTTCTGATCTTTCAATCTGTTCATTTGCTGCTGCTGGCAACTGTCCACGAGGGGAACAATGTCCTCATATTCATGGGGATCTGTGTCCCACCTGTGGAAAGCATTGCTTACATCCTTTCCGACCTGAGGAAAGAGAAGAGCATATGAAGACTTGTGAAAGTAGGCATAAGTATCTTGATGCACTGAAACGAAGTCAAGAAATTGAATGCAGTGTTTGCCTTGAGCGTGTTCTGTCAAAGCCTATATTAGCTGAACGAAAGTTTGGGCTGCTATCCGAATGTGATCATCCATTTTGCATATCCTGTATTAGGAATTGGCGTAGTAGTAACCCAACATTGGGGATGGATGTTAATAGTACATTGAGGGCTTGTCCTATTTGTCGTAAGTTATCGTATTTTGTCATTCCAAGTGTCGTTTGGTACTCAACAACTGAAGAGAAACAAGAAATCATTGACAAATACAAGGAAAAGCTCAAGTCAATTGACTGCAAGCACTTTGACTTTGGGGATGGTAACTGCCCTTTTGGATCTAGTTGTTTCTACAAGCATGCATATCGAGATGGCCGTGTGGAGCAGGTAGTATTGCGACATCTAGGTGCTGCAGATGGAAATACCGTAATTGCAAAAGATATCAGGTTGCTCTTTTCCTTCTCATTATCTCTGACCTTAACCTTGCTATGTTCCTCCTTTTTTTTTTCATTCACTAACATAAAACATGATGCTTTCAGGTTGTCGGATTTCCTTTCCAACATGCATCTAAGATGA 1272 0.3994 ISFVWAFSLSPFLCNLKIIIIFAISFLSSEFCRVLCKFFAHGACLKGEHCEYSHDWKDPPNNICTFYQKGVCAYGSRCRYDHIKASQAQSSIPSSSAIEHHTLVSDTGAFGNIISTSNGVGTAAELSLSSSPYILPSEPAWNHELVWNPEIEYYEILGEDNVGQSIITSPSDLSICSFAAAGNCPRGEQCPHIHGDLCPTCGKHCLHPFRPEEREEHMKTCESRHKYLDALKRSQEIECSVCLERVLSKPILAERKFGLLSECDHPFCISCIRNWRSSNPTLGMDVNSTLRACPICRKLSYFVIPSVVWYSTTEEKQEIIDKYKEKLKSIDCKHFDFGDGNCPFGSSCFYKHAYRDGRVEQVVLRHLGAADGNTVIAKDIRLLFSFSLSLTLTLLCSSFFFSFTNIKHDAFRLSDFLSNMHLR 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g02121 423 Gene3D - 26 60 - -
Vimu4g02121 423 PANTHER MAKORIN-RELATED 34 373 IPR045072 GO:0000209|GO:0061630
Vimu4g02121 423 Pfam RNA-binding, Nab2-type zinc finger 175 194 - -
Vimu4g02121 423 Pfam RNA-binding, Nab2-type zinc finger 35 54 - -
Vimu4g02121 423 Pfam RNA-binding, Nab2-type zinc finger 331 353 - -
Vimu4g02121 423 ProSiteProfiles Zinc finger C3H1-type profile. 30 57 IPR000571 GO:0046872
Vimu4g02121 423 SMART c3hfinal6 326 354 IPR000571 GO:0046872
Vimu4g02121 423 SMART c3hfinal6 171 196 IPR000571 GO:0046872
Vimu4g02121 423 SMART c3hfinal6 31 56 IPR000571 GO:0046872
Vimu4g02121 423 SMART c3hfinal6 59 84 IPR000571 GO:0046872
Vimu4g02121 423 ProSiteProfiles Zinc finger C3H1-type profile. 170 197 IPR000571 GO:0046872
Vimu4g02121 423 CDD RING-HC_MKRN 237 297 - -
Vimu4g02121 423 Pfam Zinc finger, C3HC4 type (RING finger) 239 296 IPR018957 GO:0046872
Vimu4g02121 423 SMART ring_2 239 296 IPR001841 -
Vimu4g02121 423 SUPERFAMILY RING/U-box 231 303 - -
Vimu4g02121 423 ProSiteProfiles Zinc finger C3H1-type profile. 58 85 IPR000571 GO:0046872
Vimu4g02121 423 SUPERFAMILY CCCH zinc finger 61 82 IPR036855 GO:0046872
Vimu4g02121 423 ProSiteProfiles Zinc finger C3H1-type profile. 326 355 IPR000571 GO:0046872
Vimu4g02121 423 SUPERFAMILY CCCH zinc finger 32 55 IPR036855 GO:0046872
Vimu4g02121 423 Pfam CCCH-type zinc finger 63 82 IPR041367 -
Vimu4g02121 423 ProSitePatterns Zinc finger RING-type signature. 263 272 IPR017907 -
Vimu4g02121 423 ProSiteProfiles Zinc finger RING-type profile. 239 297 IPR001841 -
Vimu4g02121 423 Gene3D - 61 197 - -
Vimu4g02121 423 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 233 308 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g02121 Vimu-Chr4 23481919 23483844 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vimu4g02121 zf-C3HC4 4.2e-07 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g02121 K15687 - gmx:100787817 652.129