Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g02119 ATGTCCAACAGGGTTTGCAAGTTCTATGCCCGTGGAGCGTGTTTGAAAGGGGATCAATGTGATTTTGTTCATGAGAGAAAGGATGGTGTAAGTTCTAATATTTGTACCTATTATCAAAAAGGAGTATGTGCTTATGGCAGTAGATGCAGATATAAACATGTCAAAGCTTATGAAGCGTCTTCTTCGTCTTCATCAAACGGACGTCATCCTCCTGTTTCAGATTCTGTGCTGAATCAAACCACCAAAGGGTCATCAAGTTGTGTTATAAAGGTTTCAAAGTCATCTTCATCAGACAAGTGTGCAAGGAGTTCACAACATAAGAATCCGGTCTCTTCTGGAAATGATGTTGGTCAATCCAGTTCTAGTGGTGCAACAGCATCTGGACTTTTGTTTTGTTCATTTGCTGCTGCCAACTGCCCCCTTGGAAATAAATGTTCTCGTGTTCATGGAAATCGATGTTTTTACTGTAGAAAATTTTGCTTACATCCTACTGATAGTGAGGAAAGAGAAAATCATTTGGCAACTTGTGAGAAAAGGGAAAAATACCTTCAGGCTTTGAATGATAGTCAAGAAGTAGAATGCAATGTCTGTTTGGAGCGTGTTCTTTCCAAGCCTAAACCATCTGATTGTAAGTTTGGGCTGCTTCCTCAATGTGACCATGCTTTTTGTTTATCCTGTATCCGCAATTGGCGTAATAGTGCCCCAACCTCTGGAATGGACATGAGTAATAATGGAACTGCTAATACAGTGAGAAAATGTCCTGTTTGTCGCAAACTATCATATTTTGTCATTCCAAGTGGTATTTGGTATTCTACTAAGGAAGAAAAACAAGAAATTATTGATAACTACAAGGCAAACTGCAAACAAATTGATTGCAAGCATTTTAACTTCGGAAACGGGAATTGTCCATTTGGGGCTTGTTGCTTCTACAAGCACACTGTGAAGCCTGGCTCATACACATGGATACATCGCAGGCCGCCACCACCACCACAGCGGAGACAAAACAATCTTAACATGAATGAGATGTTGGACATGCTCAGCGATGTTGATTTAACTAGTGCTGAATATCTTTCTATCATGAGGGACTCGGATCTTTTCGACGATATGGATCCATTTGGGATCATAGATATATCTGATAGGCTTGCTGGTGAATCAGGTCTTTGTTTGGGCCCTTTTGATTCTGATGAAGAAGGGGTAGATTTTTTTCAGATGGCTGCATTGTCAGAAGCACTGGTTTCTGGTGTGGATGATTTTGGTCTTGAAGATTTTGATGATGAAGAGTTCAATCCTATGGAGGCTGCCTTGTTATCCATGATGATGCATTCTGACATAGATGAAGATGAAGAAGAATACAGTGATGAGTACTACTAG 1371 0.4026 MSNRVCKFYARGACLKGDQCDFVHERKDGVSSNICTYYQKGVCAYGSRCRYKHVKAYEASSSSSSNGRHPPVSDSVLNQTTKGSSSCVIKVSKSSSSDKCARSSQHKNPVSSGNDVGQSSSSGATASGLLFCSFAAANCPLGNKCSRVHGNRCFYCRKFCLHPTDSEERENHLATCEKREKYLQALNDSQEVECNVCLERVLSKPKPSDCKFGLLPQCDHAFCLSCIRNWRNSAPTSGMDMSNNGTANTVRKCPVCRKLSYFVIPSGIWYSTKEEKQEIIDNYKANCKQIDCKHFNFGNGNCPFGACCFYKHTVKPGSYTWIHRRPPPPPQRRQNNLNMNEMLDMLSDVDLTSAEYLSIMRDSDLFDDMDPFGIIDISDRLAGESGLCLGPFDSDEEGVDFFQMAALSEALVSGVDDFGLEDFDDEEFNPMEAALLSMMMHSDIDEDEEEYSDEYY 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g02119 456 Gene3D - 30 152 - -
Vimu4g02119 456 Gene3D - 1 29 - -
Vimu4g02119 456 MobiDBLite consensus disorder prediction 98 119 - -
Vimu4g02119 456 ProSiteProfiles Zinc finger C3H1-type profile. 29 56 IPR000571 GO:0046872
Vimu4g02119 456 Pfam CCCH-type zinc finger 34 53 IPR041367 -
Vimu4g02119 456 Pfam Zinc finger, C3HC4 type (RING finger) 194 256 IPR018957 GO:0046872
Vimu4g02119 456 ProSiteProfiles Zinc finger C3H1-type profile. 1 27 IPR000571 GO:0046872
Vimu4g02119 456 MobiDBLite consensus disorder prediction 60 80 - -
Vimu4g02119 456 ProSiteProfiles Zinc finger C3H1-type profile. 286 315 IPR000571 GO:0046872
Vimu4g02119 456 SUPERFAMILY RING/U-box 185 263 - -
Vimu4g02119 456 PANTHER MAKORIN-RELATED 1 350 IPR045072 GO:0000209|GO:0061630
Vimu4g02119 456 ProSiteProfiles Zinc finger RING-type profile. 194 257 IPR001841 -
Vimu4g02119 456 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 166 262 IPR013083 -
Vimu4g02119 456 Coils Coil 273 293 - -
Vimu4g02119 456 CDD RING-HC_MKRN 192 257 - -
Vimu4g02119 456 ProSitePatterns Zinc finger RING-type signature. 218 227 IPR017907 -
Vimu4g02119 456 SUPERFAMILY CCCH zinc finger 3 25 IPR036855 GO:0046872
Vimu4g02119 456 SMART ring_2 194 256 IPR001841 -
Vimu4g02119 456 SMART c3hfinal6 126 151 IPR000571 GO:0046872
Vimu4g02119 456 SMART c3hfinal6 286 314 IPR000571 GO:0046872
Vimu4g02119 456 SMART c3hfinal6 2 26 IPR000571 GO:0046872
Vimu4g02119 456 SMART c3hfinal6 31 55 IPR000571 GO:0046872
Vimu4g02119 456 SUPERFAMILY CCCH zinc finger 32 53 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g02119 Vimu-Chr4 23471030 23475433 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vimu4g02119 zf-C3HC4 1.4e-06 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g02119 K15687 - gmx:100788886 707.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g02119 4 23471030 23475433 Vimu4g02119 4 23471030 23475433 ECH