Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g02116 ATGCTGCAATATATTTATACACAACTCTATAGCTACTGGCCAAAGATCAGAAAAACCATCTGTGCCTTCACTATGACAGATCCTCACTCCAATTTATACGCTGGAACCTTCAACTTCATGCCCCTTTATTCTCACCGCTCTTCTTTCACTTCTCAACCAAACCATTTCTCTTCTTATCCTCTTTCATACTCAAACATAACTAACACCAATATTGTTCAGTCAGAAATCTCATCTTCATCTTGTGCAGCTCCTCCTTCTCCTCCTCTCAGAGAGGCCCTTCCTCTCATAAGTCTCATAAAGCACAAGGAGAATGAACCCTCCAACGCTGGCTGCGAAGCTGAAGAGGAAGGGCACAAGAAAGTAGACATGGATGAGACCCTTTTGACTGAAGATGCTGATGATGAAACTGCGGCAGTAGCACTGCACATAGGTCTTCCTAGCGTGGATTCTTCTGATCTTCTGGGATCGGGGAAGATCTCAGCTTGTGCACAAATGGGTGAGAAAGGGGAAGTGAGTGTGGTTTCTGGACACTCTTTGGATAGATTAAACAAGGTTCAGTATTGGATTCCCACCCCTTCCCAGATTCTCATTGGCCCTACTCAGTTTTTATGTTCTGTGTGCTCCAAGAGTTTCAACAGATATAATAATCTTCAGATGCATATGTGGGGACATGGATCTCAATACAGAAAGGGGCCTGATTCTCTAAAAGGAACACAACCATCAGCAATGCTAAGGCTTCCATGTTTTTGTTGTGCACCAGGTTGTAAGCACAACATTGACCACCCAAGAGCAAGGCCTCTGAAGGATTTCAGAACCCTACAAACACATTACAAGAGAAAACATGGTATTAAACCCTACATGTGCAGAAAATGTGACAAAACATTTGCAGTGAAAGGTGATTGGCGGACACATGAGAAGAACTGTGGCAAAATATGGTACTGTTTATGTGGGTCTGATTTCAAACACAAAAGATCTCTAAAAGATCACATAAAGGCCTTTGGCCATGGTCATGGAGCTGTTGATATTGATTGCATGCAGGAAGATGAAGCTGCCTCCGAAATTGAACATGATGGAGATAGCTCTATGTGA 1089 0.4298 MLQYIYTQLYSYWPKIRKTICAFTMTDPHSNLYAGTFNFMPLYSHRSSFTSQPNHFSSYPLSYSNITNTNIVQSEISSSSCAAPPSPPLREALPLISLIKHKENEPSNAGCEAEEEGHKKVDMDETLLTEDADDETAAVALHIGLPSVDSSDLLGSGKISACAQMGEKGEVSVVSGHSLDRLNKVQYWIPTPSQILIGPTQFLCSVCSKSFNRYNNLQMHMWGHGSQYRKGPDSLKGTQPSAMLRLPCFCCAPGCKHNIDHPRARPLKDFRTLQTHYKRKHGIKPYMCRKCDKTFAVKGDWRTHEKNCGKIWYCLCGSDFKHKRSLKDHIKAFGHGHGAVDIDCMQEDEAASEIEHDGDSSM 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g02116 362 FunFam Zinc finger protein WIP2 255 337 - -
Vimu4g02116 362 Gene3D Classic Zinc Finger 255 341 - -
Vimu4g02116 362 Gene3D Classic Zinc Finger 201 224 - -
Vimu4g02116 362 ProSiteProfiles Zinc finger C2H2 type domain profile. 202 229 IPR013087 -
Vimu4g02116 362 ProSitePatterns Zinc finger C2H2 type domain signature. 204 224 IPR013087 -
Vimu4g02116 362 SUPERFAMILY beta-beta-alpha zinc fingers 270 306 IPR036236 -
Vimu4g02116 362 SUPERFAMILY beta-beta-alpha zinc fingers 195 224 IPR036236 -
Vimu4g02116 362 PANTHER ZINC FINGER PROTEIN WIP2 59 355 IPR043584 GO:0003700|GO:0010468
Vimu4g02116 362 SMART c2h2final6 312 335 IPR013087 -
Vimu4g02116 362 SMART c2h2final6 202 224 IPR013087 -
Vimu4g02116 362 SMART c2h2final6 286 306 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g02116 Vimu-Chr4 23452707 23454715 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g02116 63 355 C2H2 Transcription Factor Family AT1G51220 57.188 7.41e-118 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu4g02116 zf-C2H2_6 2.2e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g02116 - - vra:106761045 730.709
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g02116 4 23452707 23454715 Vimu4g02116 4 23452707 23454715 ECH