Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g02103 ATGCCATTGCGTCCGCAGCCACCCTCGCCTCACGCGACTGTTTTCGCCATCTCGCACCGACAAGAGATGATTCTCTACGGGGTAATCGGCGGGGCGCTCTTCTTAACGGCGCTTATTGTCTCTGTCACAGTCTTTCTCTACCGAAAACTTTCTTACAACCGAACGGCGCCGTTTGAGTACAACCAGCGACGTTTCTCTTACTATGTTCTGCGCCGCGCGACGAACTCGTTCTCGTCGCTGACGAAGCTTGGGCACGACAGGTTCGATTTGGTTCACAAAGTGACTCTTCCTTCCAGCCAGACCGTGGCGTTGAAGGTTATGGACTCGCCCAGGTCAATCCTAGGGGAGAGAGTTCCACAACGAGTTGACGCTATGTTCGAATTTGAAGTGGACGTTTGTTATTTTGTCGCGGTCGAAATCTGTTTGCAAGATGCGTTGATGGACCGGCGGTGTCCGAAGCTGATGTCTTGGGGGAAGAGGTTTGACATCGCCGTTTCGGTGGCGATGGGGTTGAAGTATTTGCACCACGCGTGTGAGCCTCTGGTGATTCATGCGGATATAAAGTCGAGCAATGTGTTGCTGGATGAGGATTTTGCAGCGAAGATTGGAGATTTTGGGCTTGCTAGGGTTAAGGCAGAGAAGAAAGAAGGGGTTGTGGAAATTGGGGTCGAGGAGTTTCGGGTGATGGAGGAGGGGGAGAGTGTGAGTGTGGTGGATGTTGACCGGTCGTCGGAGAGTTTTCCTGTGAGGGTTGCCGATTACTCGGACGCGTCGCCGGTGGGGTGA 786 0.5344 MPLRPQPPSPHATVFAISHRQEMILYGVIGGALFLTALIVSVTVFLYRKLSYNRTAPFEYNQRRFSYYVLRRATNSFSSLTKLGHDRFDLVHKVTLPSSQTVALKVMDSPRSILGERVPQRVDAMFEFEVDVCYFVAVEICLQDALMDRRCPKLMSWGKRFDIAVSVAMGLKYLHHACEPLVIHADIKSSNVLLDEDFAAKIGDFGLARVKAEKKEGVVEIGVEEFRVMEEGESVSVVDVDRSSESFPVRVADYSDASPVG 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g02103 261 ProSiteProfiles Protein kinase domain profile. 77 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g02103 261 SUPERFAMILY Protein kinase-like (PK-like) 52 214 IPR011009 -
Vimu4g02103 261 Gene3D Phosphorylase Kinase; domain 1 41 134 - -
Vimu4g02103 261 Gene3D Transferase(Phosphotransferase) domain 1 141 235 - -
Vimu4g02103 261 ProSitePatterns Serine/Threonine protein kinases active-site signature. 182 194 IPR008271 GO:0004672|GO:0006468
Vimu4g02103 261 FunFam Os07g0541700 protein 138 222 - -
Vimu4g02103 261 SMART serkin_6 77 247 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g02103 261 Pfam Protein kinase domain 136 220 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g02103 261 PANTHER OS07G0586332 PROTEIN 8 117 IPR044576 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g02103 Vimu-Chr4 23356678 23357519 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g02103 63 210 Receptor kinase-like Gene Family AT5G45780 34.545 2.82e-22 94.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XI Vimu4g02103 Pkinase 3.4e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g02103 - - gmx:100814933 311.612