Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g02091 ATGGAAGCCGCAGTGGTCGACCCCGGTTCCAGCCTTCTCAAAGCTGGTTTTGCAATTCCCGATCAAACTCCGGCCATGATAATTCCCACTCAGATGAAGCGAATGCTCGATGATGGGTCAGTGACCGATAACCCAACAGTCGACGACGTTTCCGTCGATCCGGTTTACCGAGGTTATGTCAGAGATTGGGATGCTATGGAAGATTTACTGCATTATGTATTATATACTGGCCTTGGATGGGAAATTGGCAATGAAGGGCAGATACTCTTCACGGATCCACTTTGTACTCCAAAGGCTAACAAGGAACAGTTAGTGCAACTAATGTTTGAAACATTCAACATATCAGGGTTTTATGCTTCTGAACAAGCAGTGCTGTCACTATATGCTGTAGGACGAATCTCTGGATGCACAGTTGACATTGGTCATGGAAAAATAGATATTGCACCAGTGATTGAGGGTGCTGTTAACCACATTGCCTCTAGAAGATTTGAGTTTGGAGGTACTGATCTAACTAATTTCCTTGCTCAAGAACTTTGCAAATCCAATCCGCGAGTGAATCTCAACATCTCTGAAGTTGAGAAAATAAAACAGCTATACTCATGTTGTGCTGAAGATGAATTAGCTTATCAGCAGACTCAAGATTCTTGCCCTGTGGAAACACATACCCTTCCTGACGGACAGGCATGTCTCTTTGTCATTAAAATTGGAAGAGAAAGGTATACCATTGGGGAAGCTTTGTTTCAGCCATGTCTATTGGGTTTAGAGGCTCATGGCATTGTTGACCAGCTCGTTCGCACTATTTCAAATGTGTCATCTGATAATCACCGCCAACTTCTTGAAAATACTGTGGTTTGTGGTGGCACTTCTTCTATGACCGGTTTTGAGGAAAGATTTCAGAAGGAATCTAGCCTAAGTTCATCTGCTATTCGACCTACCCTAGTAAAGCCTCCAGAATACATGCCAGAAAATTTAACCGTGTACTCTGCATGGGTGGGAGGTGCCATACTTGCCAAAGTAGTTTTTCCTCAAAATCAACATGTAACTAAGGCAGACTATGATGAAACTGGGCCTTCCATTGTTCACAGGAAATGCTTTTGA 1098 0.4317 MEAAVVDPGSSLLKAGFAIPDQTPAMIIPTQMKRMLDDGSVTDNPTVDDVSVDPVYRGYVRDWDAMEDLLHYVLYTGLGWEIGNEGQILFTDPLCTPKANKEQLVQLMFETFNISGFYASEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVNHIASRRFEFGGTDLTNFLAQELCKSNPRVNLNISEVEKIKQLYSCCAEDELAYQQTQDSCPVETHTLPDGQACLFVIKIGRERYTIGEALFQPCLLGLEAHGIVDQLVRTISNVSSDNHRQLLENTVVCGGTSSMTGFEERFQKESSLSSSAIRPTLVKPPEYMPENLTVYSAWVGGAILAKVVFPQNQHVTKADYDETGPSIVHRKCF 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g02091 365 CDD NBD_sugar-kinase_HSP70_actin 4 192 - -
Vimu4g02091 365 Gene3D - 5 359 - -
Vimu4g02091 365 SUPERFAMILY Actin-like ATPase domain 131 365 IPR043129 -
Vimu4g02091 365 Pfam Actin 2 365 IPR004000 -
Vimu4g02091 365 FunFam Actin-related protein 7 4 127 - -
Vimu4g02091 365 Gene3D Actin; Chain A, domain 4 165 256 - -
Vimu4g02091 365 Gene3D - 123 328 - -
Vimu4g02091 365 PRINTS Actin signature 100 113 IPR004000 -
Vimu4g02091 365 PRINTS Actin signature 45 67 IPR004000 -
Vimu4g02091 365 PRINTS Actin signature 217 233 IPR004000 -
Vimu4g02091 365 PRINTS Actin signature 125 144 IPR004000 -
Vimu4g02091 365 PANTHER ACTIN 4 358 IPR004000 -
Vimu4g02091 365 FunFam Actin-related protein 7 165 256 - -
Vimu4g02091 365 SUPERFAMILY Actin-like ATPase domain 2 138 IPR043129 -
Vimu4g02091 365 SMART actin_3 1 365 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g02091 Vimu-Chr4 23234050 23240953 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g02091 5 365 Cytoskeleton Gene Families AT3G12110 36.579 6.30e-67 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g02091 K16615 - gmx:100794153 675.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g02091 4 23234050 23240953 Vimu4g02091 4 23234050 23240953 ECH