Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g02074 ATGGCTTTTGGCTTGCCAATGAAGTCCATGGAGCCAACTATCTGTGGAGACAAGTTAGGTAACCTCATAATGGAAGTAGCTAAAAACTTTGTTGTATATATTGGGATGGTGCTTGCGTGCAATGGTTTACATTTTCTACTAAAGCCTTATAAACAACCACGCATTACTTCAGACATAATTGTAGGACTGTTGGTGGGCAACATAGGGTTTGTACGTGAGCTGTTTGAGAAATTTAACCTGACGTTTGGATTCATCATTGATTTTGGAATGACATGTTACATGTTTACCCTGGGAATAGAGATGGATCCTCATGCACTGTTTGCAAAACCAAATAGGTATACTAAAACTGCTGTAGCAGGAATCATATGCTCCTTCATTATGGGAGGTCTTGTAACCCCAATGTTCAAATTCTTCCCAGATGAAAACAAGCTGCTGGAGTTCACCCTAGCCTTCTCCACAATGATTTCTAGCACGGATTCACCAGTCTTGACCCGTTTAATAACCCAGCTGAAAATAGGAAAATCAGACATTGGGAAGCTCATCATTGGAGCAGGGATGCACACAGATTTTGTGTGCTGTTTGATGCTTTCCATTGGCTCCATAGCTGTGCCAATGCCAGCATATTGTCAGAATTTGCTAGGAAGGTTTGAGATTAAGAAGACTGTAAATGTAGTGTTTGCAGTGGTGGTGCAGGTAGGGTTTACAGCCATGGTGTCACCAATGCTCCTGAAGTGGGTTAGCAATGAGAACCCTGAGGGTAGACCCATGAAAGGTCCACACTTGGTACTGTCCATTGCCTTCATGGTCTTAATGTGTGCCTCCACCACTATGTATAATTATAATCCAATTTTAAGTGCTTTTCTGGTAGGGCTTTGTGTTCCCAGGGAAGGTAGAGTTTCCAGATGGTTTATCACCAGAATCAACTACATGTTGACCACAATTTTCTTTCCCATCTTTTTCTTGTGGATGGGATATGAATCTAATTTCAGGCAGTTTGAACTACACCACCCTGCAACATGGGTAAGACTTAGTGTGGTTTTAGTAGTGGCAGTAGCTGGAAAAGTTGTTGGAGTAGTCGTCTATGGGGCCATGTCTGGCGTTCACTGGCCTGAATCTGTTGCAATAGGAATGCTCCTTGTCACTAAGGGCCATTTGCAAATCTACTTAGCTATGAAAGTGATAGGTTGTGGTGGTGTAACTACTACCACAGGCATTGTGTTGGTACTTGGAACCTTTTTAACAGCTTTACCTGCATCAAGAATTGTAGCAAGCATCATTAGACGAGCAAAGAAAAGAGCACCTACTCATCGTTTGGCACTTCAAATGCTTGACCCCTCAAGTGAGCTAAGGATCCTGTTGTGTGTTCAAGGGCCTCAAAATGCTCCTGCTTCCATCAACTTGGTGGAGATCACAAAAGGGACTGCTGACACCGGCATTGTGGTGTATGTCACTGACATGATTGAACTCACTGCTGAATTATCAGACTCATTGGAGAGGGATGAAGCATTGCAGACAGCAACAGTAAAAGACAGGGCAGTCATGGAGAGGAGAGACCAAGTAACCAACTCATTCCAAGCCTATGTGGCAGACAATGATGATGGCATTACGCTCAAAAGAACCATGACACTCTCAACAATCACTAACATGCCACAAGACATTTTCATTTTAGCAGAGGACTTGATGATTGCCCTCATCATATTGCCATTCCACAGGAGCCAACGTGATGATAGAAGGTTGGATAGTGGTAATCCAGGATTCAGATACGTGAACCGAAAGGTTCTGAGAAGTGCCCCTTGTTCGGTTGGGATTCTAGTAGATAGAGGCCTTGGATCAGTTGAAGGTATAACAAGATGTGAAGCAACAATAAATGTGGCAGTGATATTCATTGGTGGAAAAGATGATAGAGAAGCCCTTGCCTACGCTAGCCGTGTAGCGCAGCATTCACAAGTTAAGCTGACGGTTCTAAGATTCCTGGTAGATAGCAGTGTGGAGTCTGCAGCATTGTACAGGATCATCTCTCCAGAGCAGGAGAAAGAGATGCAATTGGATGATGAATGCTTTACAAATTTCTACGAAAGGCATGTGATTGGGGGTCGGATTTCCTACATGGAGAAACATTTTGCAAATGCTGCTGAGACATTCTCCACTCTGAGATCCTTTGAAGGGCAATACTCATTGGTGATTGTTGGAAGGGAAGGAGGAATGAACTCAGTTTTGACAAGGGGCATGAATGATTGGCAACAGTGCCCAGAATTGGGACCAATAGGGGATGTTCTTTCTGGAACAGACTTTTCAATGACAGTTTCTGTTTTGATCATCCAACAACATAGACTTAGAGGAGAAATAGATGGGTTGGATGAAGATTTCTCTATCATATAA 2379 0.4313 MAFGLPMKSMEPTICGDKLGNLIMEVAKNFVVYIGMVLACNGLHFLLKPYKQPRITSDIIVGLLVGNIGFVRELFEKFNLTFGFIIDFGMTCYMFTLGIEMDPHALFAKPNRYTKTAVAGIICSFIMGGLVTPMFKFFPDENKLLEFTLAFSTMISSTDSPVLTRLITQLKIGKSDIGKLIIGAGMHTDFVCCLMLSIGSIAVPMPAYCQNLLGRFEIKKTVNVVFAVVVQVGFTAMVSPMLLKWVSNENPEGRPMKGPHLVLSIAFMVLMCASTTMYNYNPILSAFLVGLCVPREGRVSRWFITRINYMLTTIFFPIFFLWMGYESNFRQFELHHPATWVRLSVVLVVAVAGKVVGVVVYGAMSGVHWPESVAIGMLLVTKGHLQIYLAMKVIGCGGVTTTTGIVLVLGTFLTALPASRIVASIIRRAKKRAPTHRLALQMLDPSSELRILLCVQGPQNAPASINLVEITKGTADTGIVVYVTDMIELTAELSDSLERDEALQTATVKDRAVMERRDQVTNSFQAYVADNDDGITLKRTMTLSTITNMPQDIFILAEDLMIALIILPFHRSQRDDRRLDSGNPGFRYVNRKVLRSAPCSVGILVDRGLGSVEGITRCEATINVAVIFIGGKDDREALAYASRVAQHSQVKLTVLRFLVDSSVESAALYRIISPEQEKEMQLDDECFTNFYERHVIGGRISYMEKHFANAAETFSTLRSFEGQYSLVIVGREGGMNSVLTRGMNDWQQCPELGPIGDVLSGTDFSMTVSVLIIQQHRLRGEIDGLDEDFSII 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g02074 792 Gene3D - 449 745 - -
Vimu4g02074 792 Gene3D - 27 434 IPR038770 -
Vimu4g02074 792 PANTHER CATION/H + ANTIPORTER 30 777 - -
Vimu4g02074 792 FunFam Cation/H(+) antiporter 28 27 435 - -
Vimu4g02074 792 Pfam Sodium/hydrogen exchanger family 32 413 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g02074 Vimu-Chr4 23043833 23047331 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g02074 14 792 Antiporter Super Family AT3G52080 46.173 0.0 713
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g02074 K26731 - gmx:100786469 1256.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02776 5 37289137 37290435 Vimu4g02074 4 23043833 23047331 PCT