Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g02073 ATGGATGAATACTACTGTAAAGCATACCCACTAGATTCTCGCTCTGCGTCAGAATCTCGAGTTTGGCCCAATGATCAACAACACTTCAGTGTAGATTTTCAGTACTCAGACATGCAAGTTTTGAATGGAAGCAAATTAGAAGAAGCCTTTGACAACGTTTTACTCCACAACTTTCAAAACATTCCGAAGAATGACATGTTGAAAGAAACAACCATCGTGTCCTGTCTTTCCGACGTGGGTGTGCCTCGAAATGCTCACGGTGTCGTGGTCGCAGAAGTGTTACGGTGTGCACGTGACATGATTGGTGACACAGCTCACACAGATACACGTCTTCTTCGTATGCGTGTGGAAATCGCCATTGCTCGTGCAAAGCAAGATGAAATAAGTGTGAGTGGAAACCAAGATGGAATAACTGTCACTGAAATAAACAGCGTTAGCGATGATGATTATTTTGAGGAAGCTCTGGAATATGGTTTCGACGAAGACGATGATGATTATGGATTAATGCCTGCAGACAAGGCATTTGTTGAAGGTTTGGAGGATGTTCAACAAAAGGGTTCGCAAAGGTGTGCCATTTGTTTCGAGGATTTTCTTTTTGGTGTTCGTATGCCTTGCTTGCATGCGTTTCACAAAAGCTGCATCAGTGAGTGGTTGCGAATAGGCAATTCTTGCCCTTTGTGTCGCTTTTATTTGCCTACTCAAACTGATTGA 711 0.4304 MDEYYCKAYPLDSRSASESRVWPNDQQHFSVDFQYSDMQVLNGSKLEEAFDNVLLHNFQNIPKNDMLKETTIVSCLSDVGVPRNAHGVVVAEVLRCARDMIGDTAHTDTRLLRMRVEIAIARAKQDEISVSGNQDGITVTEINSVSDDDYFEEALEYGFDEDDDDYGLMPADKAFVEGLEDVQQKGSQRCAICFEDFLFGVRMPCLHAFHKSCISEWLRIGNSCPLCRFYLPTQTD 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g02073 236 ProSiteProfiles Zinc finger RING-type profile. 190 228 IPR001841 -
Vimu4g02073 236 SMART ring_2 190 227 IPR001841 -
Vimu4g02073 236 CDD RING-H2_PA-TM-RING 190 228 - -
Vimu4g02073 236 SUPERFAMILY RING/U-box 179 234 - -
Vimu4g02073 236 Pfam Ring finger domain 189 228 IPR001841 -
Vimu4g02073 236 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 171 236 IPR013083 -
Vimu4g02073 236 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 77 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g02073 Vimu-Chr4 23036725 23037492 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g02073 159 233 C3H Transcription Factor Family AT5G15820 41.667 1.42e-13 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g02073 - - vum:124848049 342.813