Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g02065 ATGAAAATCCCGTGTTGTCCGGTTTGCCAAACGCGTTACAACGAGGAGGAGAGAGTTCCTCTTCTGCTCCAATGCGGCCACGGATACTGCAGAGAGTGTCTCTCTAGAATGTTCGCGCCCTCTTCGGATGCTACGCTGGCGTGTCCCAAGTGCCGACACGTGTCCACCGTGGGGAACTCCGTGCAGGCTCTGCGGAAGAACTACGCGGTGCTCGCGCTGGTCCACTCCACCACCGCCGCAGCCAACGGGGCCGGGGGTGGAGGGGGAGGGGAGAATTTAGACTGGGACTACACCGACGAGGAAGAGGAGGAGGACGGAGGAGGAGGGGAGGAGGATGAGGACGACGAGAAGCGGCGACGGAACAGCCGCGAGTCGCAGGCGTCGAGCTCTGGCGGGTGCGAGCCGGTGATCGAGGTCGGTGGCGGCGCGCACCAGGACCTGAAGTTGGTGCGGCGGATTGGAGAGGGGAGGAGGGCGGGAGTGGAGATGTGGATGGCGGTGATCAGCGGTGGCGGTGGTGTGGAAGGGGGACGGAGGTGCCGGCACAGCGTGGCGGTGAAGAAGGTGACTGTGGTGGAGGGGATGGATTTGGATTGGGTTCAGGGAAAGTTGGAGGATTTGCGTAGGGCTTCGATGTGGTGTAGGAATGTGTGCACTTTCCATGGGACAATGAGGGTGGAGGACAGTTTGTGCCTCGTGATGGATAAGTGCTATGGATCGGTTCAGTCCGAGATGCAGCGCAATGAGGGAAGGCTCACTTTGGAACAAGTCCTAAGATACGGGGCTGACATTGCCCGAGGGGTCGTTGAACTTCATGCTGCAGGCGTTGTTTGCATGAATTTAAAACCATCCAATCTTCTTCTTGACGCAAATGGTCACGCCGTGGTTTCTGATTATGGACTTGCTACAATTCTGAAGAAGCCTTCATGTTGGAAGGCACGACCAGAGTGTGACTCTGTGAAGATCCATTCCTGTATGGAATGTATAATGCTCAGCCCACATTATACAGCACCGGAGGCTTGGGAACCTGTGAAGAAGTCGTTAAATTTGTTTTGGGATGATGGAATAGGTATATCTTCCGAATCAGATGCCTGGAGTTTTGGTTGTACATTGGTGGAGATGTGCACGGGTTCCATTCCGTACGTGGAGCAACTCATTCTTTACTCAACTTTTATTTCTTATGTTCTTCCCTCTTTTTCCAAGTTTCTTAGTGCAAATTCTACATGCAGTTGGGCAGGTTTAAGTGCAGAGGAAATCTATCGAGCTGTTGTTAAAGCTAAGAAACTGCCTCCACAGTATGCTAGTGTGGTTGGAGGTGGAATTCCGAGGGAATTGTGGAAGATGATTGGAGAGTGCTTGCAATTCAAGCCATCTAAAAGGCCTACTTTTAGTGCTATGCTGGCAATATTTCTCCGTCATTTGCAGGAAATACCACGCAGCCCTCCTGCAAGCCCTGATAATGGCTTAGATAATAAGGGCTCTGTATCAAATGTGATCGAGCCTTCACCTGTACCTGAATTGGAAGTTCCTCAGGAAAACCCTAACCATCTTCATCAACTTGTGTCTGAAGGAGATACTGCAGGTGTTAGGGATCTTCTTGCAAAGGCTGTATTAGAAAATGGCAGCAACTACCTAACTTCGTTATTGGAAGCACAAAATGCTCATGGACAAACAGCTCTCCACTTAGCTTGTAGACGGGGCAGTGCAGAACTTGTCGAGACAATTTTGGAGTATAGAGAAGCAAATGTTGATGTATTGGACAAAGATGGAGATCCTCCTCTTGTTTTTGCATTAGCAGCTGGGTCCCTAGAATGTGTTTGTAGCCTTATCAAAAGAAATGCTAATGTGCAGTCAAGATTGAGAGATGGTATTGGTCCATCTGTAGCTCACGTTTGTGCCTATCATGGCCAGCCAGATTGTATGCGAGAATTACTATTAGCCGGAGCTGATCCTAATGCAGTGGATGAAGAAGGTGAATCTGTTCTGCATAGAGCAATTTCCAAGAAGTACACGGACTGTGCACTTGTAATATTGGAGAATGGAGGATGTAAATCAATGTCCATCGTGAATTCAAAGAACCTGACACCACTGCACTTGTGTGTGGCAACATGGAATGTTGCTGTTGTGAAGAGATGGGCGGAAGTTGCAACTTCTGATGAGATTGCTGAAGCAATTGACATACCAAGCCCTATTGGCACTGCATTGTGCATGGCAGCTGCTTCTAAGAAAGACCATGAGAAAGGGGTCCTTGCCCTTCAATTTTCCCATATTGCCCGTTTCCCAGACGTTCTAAAGAACCACTTGGAATGCCTCCAGTCGGCATTTGATTATGCTTATGGCTCTTCTCCTTTCTCGAAGAGGTGGAAACCAAGCACACTCCTTGTTGGGACCAAGCACTCTTCCTTTCCTTGCTGCTCCGCTGATACAACACCTCATCAAAAACCGCTAGCAGTGACTTGTCCTGTCACCTCCAGTGTGTTCTTCCCGCGACCAGCCAGCAATGAGACTCAAGATGGTGATCTTTGGTGTCTATCCTTCTCCTTCTCCTTCACCCCCAGTCTTGCTATTTTGCATGAGGGCAGAGAACTGGTGCAGATACTGCTTGCAGCTGGAGCTGATCCCTCTGCTCAAGATTCACAAAATGGGAGGACAGCATTGCATACGGCTGCTATGACTAATGATGTCGACTTGGTTCAGGTTATTCTGGCTGCTGGGGTTGATGTGAACATTCGCAATGTGCACAACAGTATTCCTCTTCACTTGGCCTTAGCTAGGGGTGCTAAGGCATGTGTTGGACTGCTTCTAGCTGCTGGAGCAGATTATAATTTGCAGGATGACGACGGTGACAATGCTTTCCATATAGCCGCCGAGACAGCAAAAATGATTCGTGAAAATATGAACTGGCTTATTATTATGCTAATGAATCCTGATGCTGATATTGAAGTCAGAAACCACAGTGGCAAGACACTACGTGACATTTTGGAGGCTCTCCCCCGAGAATGGATATCCGAAGATCTGATGGAAGCACTCTCAAATAGGGGAGTTCATTTGTCTCCTACATCATTTGAAGTGGGAGAGTGGGTGAAGTTTAAAAAATCTGTCACAACTCCAACACATGGATGGCAAGGTGCTAATCCACAAAGTGTTGGTTTTGTGCAAAGTGTTCCAGACAAAGATAATCTCGTTGTTTCATTTTGTTCTGGAGAGGTTCATCTTCTGGCAAATGAAGTTATAAAAGTCATTCCATTGGACAGGGGACAACATGTACAACTGAAAGAAGATGTAAAAGAGCCTAGATTCGGTTGGCGTGGGCAGTCACGTGACAGCATTGGGACAGTATTATGTGTTGATGATGATGGAATTCTCCGTGTTGGGTTTCCCGGAGCATCTAGAGGATGGAAGGCTGACCCAGCAGAGATGGAACGTGTTGAAGAATTCAAGGTTGGAGACTGGGTTCGCATTCGTCCAACTCTTACATCTGCAAAGCATGGACTAGGATCTGTGACTCCAGGAAGCATTGGCATTGTATATTGTATACGGCCAGACAGCAGTCTGTTAGTAGAACTGAGTTATCTTCCAAATCCATGGCATTGTGAGCCAGAGGAGGTTGAGCATGTTGCTCCTTTTAGGATTGGTGATCGGGTATGCGTGAAACGGTCTGTTGCAGAACCTAGATATGCTTGGGGTGGTGAGACACATCATAGTGTTGGAAGAATAAGCGAGATTGAGAATGATGGTCTCTTAATTATAGAAATACCAAATCGACCCATACCATGGCAAGCTGATCCCTCGGATATGGAGAAGGTGGAAGATTTCAAGGTTGGAGATTGGGTAAGAGTGAAAGCTTCAGTGTCTTCTCCAAAATATGGATGGGAAGATATTACAAGGAATAGCATTGGTGTAATTCATGGCCTCGATGAGGATGGCGATATGATTGTTGCTTTTTGCTTCAGAAGTAAGCCTTTCTCGTGCTCAGTCACTGATGTGGAGAAAGTTCCTCCATTTGAGGTGGGACAAGAAATTCATGTGATTGCATCAGTTACTCAGCCTCGTCTTGGGTGGTCAAATGAATCACCAGCTACCGTTGGAAAAGTAGTGAGAATAGACATGGATGGTGCTCTCAATGTGAGGGTCACTGGTAGGCAGAGCTTGTGGAAAGTTTCTCCTGGAGATGCAGAGCGGCTTCCAGGATTTGAAGTTGGGGATTGGGTTCGCTCAAAACCAAGCCTTGGAACCAGACCAAGCTATGACTGGAATAGTGTTGGGAGAGAAAGTTTAGCTGTTGTGCATAGCGTACAGGATTCTGGATACTTGGAGTTGGCTTGTTGTTTTCGCAAAGGGAAGTGGATCACTCATTATACAGATGTTGAAAGGGTTCCTAGCTTTAAAGTTGGGCAGTATGTTAGGTTCCGAACTGGTTTGGTTGAACCAAGGTGGGGCTGGAGAGGAGCTCGGCCTGAATCTCAAGGGATTATAACCAGTATTCATGCCGATGGAGAAGTCAGGGTCGCATTTTTTGGTCTTCCAGAACTGTGGAGAGGAGATCCTTCAGACCTTGAGATCGAACAAATATTTGAAGTGGGAGAGTGGGTGAGATTGACAGAAAATGCAAATAATTGGAAATCAATTGGACCAGGTAGTGTTGGTGTGGTTCAAGGAATAGGGTATGAAGGAGATGAATTGGACAGAAGCATTTTTGTTGGATTTTGTGGGGAGCAAGAAAAGTGGGTAGGACCTACTTCACATCTTGAAAGATTTGACAAACTCTTTGTTGGACAGAAGGTTAGAGTGAAACAATATGTGAAGCAACCAAGATTTGGATGGTCAGGGCATACCCATGCTAGTCTTGGGACCATACAGGCTATTGATGCTGATGGAAAGCTTCGAATATACACACCAGCAGGATCCAGAACATGGATGTTGGACCCATCAGAAGTGGAGGTGGTAGAAGAGAAGGAGCTCTGTATTGGTGACTGGGTGAGGGTTAAAGCTTCGGTTTCAACCCCAACACACCATTGGGGTGAAGTGAGTCATTCAAGCATTGGAGTTGTGCATAGAATGGAAGATGAAGATCTTTGGGTGGCTTTCTGTTTCATGGAGAGGCTATGGCTTTGTAAGGCTTGGGAAATGGAACGGGTTAGGCCATTTAAAGTGGGTGACAAGGTAAGGATCAGAGATGGACTGGTGAACCCACGTTGGGGATGGGGAATGGAGACTCATGCTAGCAAGGGAGAGGTTGTAGGGGTAGATGCAAATGGAAAACTAAGAATAAAATTCCGGTGGAGGGAAGGGAGGCCCTGGATAGGAGATCCTGCTGATCTTGCCCTTGATGAAGACTGA 5340 0.4753 MKIPCCPVCQTRYNEEERVPLLLQCGHGYCRECLSRMFAPSSDATLACPKCRHVSTVGNSVQALRKNYAVLALVHSTTAAANGAGGGGGGENLDWDYTDEEEEEDGGGGEEDEDDEKRRRNSRESQASSSGGCEPVIEVGGGAHQDLKLVRRIGEGRRAGVEMWMAVISGGGGVEGGRRCRHSVAVKKVTVVEGMDLDWVQGKLEDLRRASMWCRNVCTFHGTMRVEDSLCLVMDKCYGSVQSEMQRNEGRLTLEQVLRYGADIARGVVELHAAGVVCMNLKPSNLLLDANGHAVVSDYGLATILKKPSCWKARPECDSVKIHSCMECIMLSPHYTAPEAWEPVKKSLNLFWDDGIGISSESDAWSFGCTLVEMCTGSIPYVEQLILYSTFISYVLPSFSKFLSANSTCSWAGLSAEEIYRAVVKAKKLPPQYASVVGGGIPRELWKMIGECLQFKPSKRPTFSAMLAIFLRHLQEIPRSPPASPDNGLDNKGSVSNVIEPSPVPELEVPQENPNHLHQLVSEGDTAGVRDLLAKAVLENGSNYLTSLLEAQNAHGQTALHLACRRGSAELVETILEYREANVDVLDKDGDPPLVFALAAGSLECVCSLIKRNANVQSRLRDGIGPSVAHVCAYHGQPDCMRELLLAGADPNAVDEEGESVLHRAISKKYTDCALVILENGGCKSMSIVNSKNLTPLHLCVATWNVAVVKRWAEVATSDEIAEAIDIPSPIGTALCMAAASKKDHEKGVLALQFSHIARFPDVLKNHLECLQSAFDYAYGSSPFSKRWKPSTLLVGTKHSSFPCCSADTTPHQKPLAVTCPVTSSVFFPRPASNETQDGDLWCLSFSFSFTPSLAILHEGRELVQILLAAGADPSAQDSQNGRTALHTAAMTNDVDLVQVILAAGVDVNIRNVHNSIPLHLALARGAKACVGLLLAAGADYNLQDDDGDNAFHIAAETAKMIRENMNWLIIMLMNPDADIEVRNHSGKTLRDILEALPREWISEDLMEALSNRGVHLSPTSFEVGEWVKFKKSVTTPTHGWQGANPQSVGFVQSVPDKDNLVVSFCSGEVHLLANEVIKVIPLDRGQHVQLKEDVKEPRFGWRGQSRDSIGTVLCVDDDGILRVGFPGASRGWKADPAEMERVEEFKVGDWVRIRPTLTSAKHGLGSVTPGSIGIVYCIRPDSSLLVELSYLPNPWHCEPEEVEHVAPFRIGDRVCVKRSVAEPRYAWGGETHHSVGRISEIENDGLLIIEIPNRPIPWQADPSDMEKVEDFKVGDWVRVKASVSSPKYGWEDITRNSIGVIHGLDEDGDMIVAFCFRSKPFSCSVTDVEKVPPFEVGQEIHVIASVTQPRLGWSNESPATVGKVVRIDMDGALNVRVTGRQSLWKVSPGDAERLPGFEVGDWVRSKPSLGTRPSYDWNSVGRESLAVVHSVQDSGYLELACCFRKGKWITHYTDVERVPSFKVGQYVRFRTGLVEPRWGWRGARPESQGIITSIHADGEVRVAFFGLPELWRGDPSDLEIEQIFEVGEWVRLTENANNWKSIGPGSVGVVQGIGYEGDELDRSIFVGFCGEQEKWVGPTSHLERFDKLFVGQKVRVKQYVKQPRFGWSGHTHASLGTIQAIDADGKLRIYTPAGSRTWMLDPSEVEVVEEKELCIGDWVRVKASVSTPTHHWGEVSHSSIGVVHRMEDEDLWVAFCFMERLWLCKAWEMERVRPFKVGDKVRIRDGLVNPRWGWGMETHASKGEVVGVDANGKLRIKFRWREGRPWIGDPADLALDED 1779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g02065 1779 SUPERFAMILY Ankyrin repeat 512 710 IPR036770 -
Vimu4g02065 1779 ProSiteProfiles Ankyrin repeat profile. 881 913 IPR002110 GO:0005515
Vimu4g02065 1779 ProSiteProfiles Protein kinase domain profile. 147 471 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g02065 1779 Pfam Mind bomb SH3 repeat domain 1398 1519 IPR040847 -
Vimu4g02065 1779 Pfam Mind bomb SH3 repeat domain 1202 1266 IPR040847 -
Vimu4g02065 1779 Pfam Mind bomb SH3 repeat domain 1022 1140 IPR040847 -
Vimu4g02065 1779 Pfam Mind bomb SH3 repeat domain 1272 1390 IPR040847 -
Vimu4g02065 1779 Pfam Mind bomb SH3 repeat domain 1655 1774 IPR040847 -
Vimu4g02065 1779 Pfam Mind bomb SH3 repeat domain 1525 1646 IPR040847 -
Vimu4g02065 1779 SMART ring_2 6 51 IPR001841 -
Vimu4g02065 1779 SUPERFAMILY Protein kinase-like (PK-like) 141 483 IPR011009 -
Vimu4g02065 1779 ProSiteProfiles Ankyrin repeat profile. 555 588 IPR002110 GO:0005515
Vimu4g02065 1779 SMART ANK_2a 555 585 IPR002110 GO:0005515
Vimu4g02065 1779 SMART ANK_2a 624 653 IPR002110 GO:0005515
Vimu4g02065 1779 SMART ANK_2a 657 688 IPR002110 GO:0005515
Vimu4g02065 1779 SMART ANK_2a 692 723 IPR002110 GO:0005515
Vimu4g02065 1779 SMART ANK_2a 881 910 IPR002110 GO:0005515
Vimu4g02065 1779 SMART ANK_2a 589 618 IPR002110 GO:0005515
Vimu4g02065 1779 SMART ANK_2a 914 943 IPR002110 GO:0005515
Vimu4g02065 1779 SMART ANK_2a 947 982 IPR002110 GO:0005515
Vimu4g02065 1779 Gene3D - 848 1001 IPR036770 -
Vimu4g02065 1779 MobiDBLite consensus disorder prediction 80 139 - -
Vimu4g02065 1779 FunFam E3 ubiquitin-protein ligase KEG 495 725 - -
Vimu4g02065 1779 ProSiteProfiles Ankyrin repeat profile. 624 656 IPR002110 GO:0005515
Vimu4g02065 1779 Pfam Ring finger domain 6 52 IPR001841 -
Vimu4g02065 1779 SUPERFAMILY RING/U-box 5 61 - -
Vimu4g02065 1779 FunFam E3 ubiquitin-protein ligase KEG 880 1013 - -
Vimu4g02065 1779 Pfam Ankyrin repeats (3 copies) 630 703 IPR002110 GO:0005515
Vimu4g02065 1779 Pfam Ankyrin repeats (3 copies) 855 945 IPR002110 GO:0005515
Vimu4g02065 1779 Pfam Ankyrin repeats (3 copies) 534 617 IPR002110 GO:0005515
Vimu4g02065 1779 MobiDBLite consensus disorder prediction 480 511 - -
Vimu4g02065 1779 CDD RING-HC_KEG-like 3 59 - -
Vimu4g02065 1779 MobiDBLite consensus disorder prediction 94 111 - -
Vimu4g02065 1779 SUPERFAMILY Ankyrin repeat 854 1006 IPR036770 -
Vimu4g02065 1779 ProSiteProfiles Ankyrin repeat region circular profile. 555 577 - -
Vimu4g02065 1779 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 83 IPR013083 -
Vimu4g02065 1779 PANTHER E3 UBIQUITIN-PROTEIN LIGASE KEG 408 748 IPR044584 GO:0004842|GO:0006952|GO:0009738|GO:0016567
Vimu4g02065 1779 Gene3D Transferase(Phosphotransferase) domain 1 237 487 - -
Vimu4g02065 1779 ProSiteProfiles Ankyrin repeat profile. 914 946 IPR002110 GO:0005515
Vimu4g02065 1779 ProSitePatterns Zinc finger RING-type signature. 25 34 IPR017907 -
Vimu4g02065 1779 ProSiteProfiles Ankyrin repeat region circular profile. 881 912 - -
Vimu4g02065 1779 Pfam Protein kinase domain 181 467 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g02065 1779 Gene3D - 505 778 IPR036770 -
Vimu4g02065 1779 ProSiteProfiles Ankyrin repeat region circular profile. 914 946 - -
Vimu4g02065 1779 PRINTS Ankyrin repeat signature 863 877 IPR002110 GO:0005515
Vimu4g02065 1779 PRINTS Ankyrin repeat signature 556 571 IPR002110 GO:0005515
Vimu4g02065 1779 ProSiteProfiles Zinc finger RING-type profile. 6 52 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g02065 Vimu-Chr4 22949543 22971818 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g02065 216 467 MAP Kinase Kinase Kinase AT4G18950 23.529 7.87e-14 73.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-1 Vimu4g02065 Pkinase 1.2e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g02065 K16279 - aew:130795580 2293.08