Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g02063 ATGGGTGAAGCTGTGGAAGCTGAAGAAAGACCCAGATTCAGATATATCAGAAGCTATTTCTGCGAGTTCTGCGGTATCCGGAGGTCCAAGAAAATTCTCATCACCTCTCACGTGAATTCACACCACAAGGAGGTCGAAAAGGCAAGGGCTGAAAGGGAAAGAGAACCCGAAGCTGAGGCTGTGAAGTCCAACACTTGCGGGGAATGTGGTGCCAGTTTCAAGAAACAAGCTTATTTGTTGCAGCACATGCAAAGTCATTCGCTTGAGAGAAAGAACTCCAAAATGCTTGAGGCAGCATGTCTAGACTTGATGGATCAGTATCGGGTTGGGAGACCTCCTGTGAAGCTCCATCAAGGATGCCTCATTCACGCAAAAATTGAGGCAAGTTACCGACGGAAGGATCACCTGACTCGACACGTTTTACAGCATCAAGGGAAGACTTTTAAATGCCCCGTTGAGAATTGCGGCACTGAGTTCTCTTTGCAAAGCAATGTGAAACGGCATGTTATGGAGGTCCGTGATGACAATTCTACCTCTACCTTTGACAAAACTCACAAGCAGCATACATGTCCAGAGATTGGCTGTGGGAAGGTTTTCAGATTTGCATCACGGCTACAAAAGCATGTTGATTCTCATGATATTGGGCACAATTTTGAAGAAAGCCTTTATCCTGCAGTTAAACTGGAGTCAGTAGATGTGGTGTGCTTAGAGCCTGGTTGCATGAAGCATTTCACTAATGTCCAGTGCCTTCAAGCCCATGTAAAGTCCTCCCATCAATACATGACCTGTGAAACTTGTGGTAGTAAGCAACTAAAGAAGAATATTAAGCGTCATCTTGGTGTACATGAACCTCTGAATTCACCAGAGATCTTTCGATGTGAGTTCAAGGGTTGTAGCTGCACATTTTCAAGAAAATCTAATCTTGATAAGCATAAAAGGGTTGTTCACATTAAGGAAAAACCTTTTGTGTGCGGGTTTGCTGATTGTGGCATGAGATTTGCTTACAAACATGTTCGAGATAACCATGAGAAAACTGCAAAACATGTTTTTACCCTTGGTGATTTTGAAAGGGCTGATGAAGAGTTTAGGTCAAGACCTAGGGGAGGGAGGAAGAGGAAATGTTCTACTGTTGAAATGTTACTAAGGAACAGGGTTACCCCTCCAAGTCAATTGGAGAGTTGGTTATTCATGCAGGATAGATAG 1203 0.4364 MGEAVEAEERPRFRYIRSYFCEFCGIRRSKKILITSHVNSHHKEVEKARAEREREPEAEAVKSNTCGECGASFKKQAYLLQHMQSHSLERKNSKMLEAACLDLMDQYRVGRPPVKLHQGCLIHAKIEASYRRKDHLTRHVLQHQGKTFKCPVENCGTEFSLQSNVKRHVMEVRDDNSTSTFDKTHKQHTCPEIGCGKVFRFASRLQKHVDSHDIGHNFEESLYPAVKLESVDVVCLEPGCMKHFTNVQCLQAHVKSSHQYMTCETCGSKQLKKNIKRHLGVHEPLNSPEIFRCEFKGCSCTFSRKSNLDKHKRVVHIKEKPFVCGFADCGMRFAYKHVRDNHEKTAKHVFTLGDFERADEEFRSRPRGGRKRKCSTVEMLLRNRVTPPSQLESWLFMQDR 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g02063 400 ProSitePatterns Zinc finger C2H2 type domain signature. 66 86 IPR013087 -
Vimu4g02063 400 ProSiteProfiles Zinc finger C2H2 type domain profile. 291 321 IPR013087 -
Vimu4g02063 400 ProSitePatterns Zinc finger C2H2 type domain signature. 235 258 IPR013087 -
Vimu4g02063 400 ProSitePatterns Zinc finger C2H2 type domain signature. 190 212 IPR013087 -
Vimu4g02063 400 ProSiteProfiles Zinc finger C2H2 type domain profile. 188 212 IPR013087 -
Vimu4g02063 400 SUPERFAMILY beta-beta-alpha zinc fingers 17 86 IPR036236 -
Vimu4g02063 400 SUPERFAMILY beta-beta-alpha zinc fingers 129 170 IPR036236 -
Vimu4g02063 400 ProSiteProfiles Zinc finger C2H2 type domain profile. 64 91 IPR013087 -
Vimu4g02063 400 Gene3D Classic Zinc Finger 287 365 - -
Vimu4g02063 400 ProSiteProfiles Zinc finger C2H2 type domain profile. 148 178 IPR013087 -
Vimu4g02063 400 Pfam Zinc finger, C2H2 type 291 316 IPR013087 -
Vimu4g02063 400 Pfam Zinc finger, C2H2 type 65 86 IPR013087 -
Vimu4g02063 400 Pfam Zinc finger, C2H2 type 188 212 IPR013087 -
Vimu4g02063 400 Gene3D Classic Zinc Finger 16 102 - -
Vimu4g02063 400 SUPERFAMILY beta-beta-alpha zinc fingers 274 329 IPR036236 -
Vimu4g02063 400 PANTHER ZINC FINGER PROTEIN 7 390 - -
Vimu4g02063 400 ProSitePatterns Zinc finger C2H2 type domain signature. 293 316 IPR013087 -
Vimu4g02063 400 Gene3D Classic Zinc Finger 124 172 - -
Vimu4g02063 400 Gene3D Classic Zinc Finger 173 260 - -
Vimu4g02063 400 SMART c2h2final6 148 170 IPR013087 -
Vimu4g02063 400 SMART c2h2final6 19 41 IPR013087 -
Vimu4g02063 400 SMART c2h2final6 291 316 IPR013087 -
Vimu4g02063 400 SMART c2h2final6 233 258 IPR013087 -
Vimu4g02063 400 SMART c2h2final6 64 86 IPR013087 -
Vimu4g02063 400 SMART c2h2final6 188 212 IPR013087 -
Vimu4g02063 400 SMART c2h2final6 261 282 IPR013087 -
Vimu4g02063 400 SMART c2h2final6 322 348 IPR013087 -
Vimu4g02063 400 ProSitePatterns Zinc finger C2H2 type domain signature. 324 348 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g02063 Vimu-Chr4 22936570 22939064 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g02063 128 351 C2H2 Transcription Factor Family AT1G72050 46.739 2.42e-76 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu4g02063 zf-C2H2 0.0042 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g02063 K09191 - gmx:100801812 556.984