Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g02060 ATGGAGGAGAAATCAGAGAAGCAAGATGATAGCCACCCATCTCTCTTCTTCTCGGATCATGCAACCATCAAAGATGAGAATTCTCCAAGAAAAGCAATTGGTGGTGGCAGTGATAGGCTAAAGAGAGATGAATGGAGTGAAGGGGCTGTGTCAACCCTTCTTGAGGCCTATGAGGCCAAATGGGTGCTCAGAAACAGAGCCAAACTCAAGGGCCATGACTGGGAAGATGTTGCAAAACATGTCTCATCAAGAGCCAACTCCACCAAGTCACCAAAGACACAGACTCAGTGCAAGAACAAGATTGAGTCCATGAAAAAAAGGTACAGATCAGAGTCTGCAACCACTGCTGATGCATCATCTTGGCCTTTGTACTCTCGCCTTGATCTTCTCCTGCGTGGCACAGGACCAATATCTTCACTTCCGCCAACACCAACACCAACACCAACACCAACAATAGCACCATCATTTCAACCACCACACGCCACCACCAATAGTAACCAGGCTCTGGTGTTGTTGGATCCTCCTTCACTGGCTGTGTCACAAGCTCCTCCTTCTGCTGCTCCTCCACCACCCACACAAAACTCTCACGGATCCAATGGTGTTGAAAGACTAGTCAAGGAAGATGGGTTAGGAGGAAAGTCATGTGAGCATGTATCTGACAAGAATGTGATGGACTCGGATAGTAGCACACCTGCTCTATACAGTGAAAAGGAGAAGGTGAGATGCAACAAGAGGAAGATGAAAAGTGAGAACAACAAGAGGGTGAGAAGGAACAGTAACAACAGTGATAACAATAACCAAAACAGTGAAGACATGGAGATAGCAGAAAGCATAAGGTGGCTAGCAGAAGTGGTAATGAGGTCAGAACAAACCAGAATGGAGACAATGAAAGAGATTGAGAAGATGAGGGTTGAAGCTGAGGCAAAGAGAGGGGAGATGGAGCTGAAGAGAACTGAAATCATAGCCAACACTCAACTAGAGATTGCTAGGATCTTTGCAAGTGTCAATAAAGGTGTTGATTCTTCACTAAGAATTGGAAGAAGTTAA 1047 0.4556 MEEKSEKQDDSHPSLFFSDHATIKDENSPRKAIGGGSDRLKRDEWSEGAVSTLLEAYEAKWVLRNRAKLKGHDWEDVAKHVSSRANSTKSPKTQTQCKNKIESMKKRYRSESATTADASSWPLYSRLDLLLRGTGPISSLPPTPTPTPTPTIAPSFQPPHATTNSNQALVLLDPPSLAVSQAPPSAAPPPPTQNSHGSNGVERLVKEDGLGGKSCEHVSDKNVMDSDSSTPALYSEKEKVRCNKRKMKSENNKRVRRNSNNSDNNNQNSEDMEIAESIRWLAEVVMRSEQTRMETMKEIEKMRVEAEAKRGEMELKRTEIIANTQLEIARIFASVNKGVDSSLRIGRS 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g02060 348 Coils Coil 296 316 - -
Vimu4g02060 348 MobiDBLite consensus disorder prediction 201 223 - -
Vimu4g02060 348 MobiDBLite consensus disorder prediction 135 163 - -
Vimu4g02060 348 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 28 334 IPR044823 -
Vimu4g02060 348 FunFam Trihelix transcription factor ASIL2 45 110 - -
Vimu4g02060 348 Pfam Myb/SANT-like DNA-binding domain 42 129 IPR044822 -
Vimu4g02060 348 MobiDBLite consensus disorder prediction 23 41 - -
Vimu4g02060 348 Gene3D - 45 110 - -
Vimu4g02060 348 MobiDBLite consensus disorder prediction 1 41 - -
Vimu4g02060 348 MobiDBLite consensus disorder prediction 178 271 - -
Vimu4g02060 348 MobiDBLite consensus disorder prediction 139 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g02060 Vimu-Chr4 22904900 22906840 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g02060 5 331 Trihelix Transcription Factor Family AT3G14180 25.668 7.74e-23 97.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vimu4g02060 Myb_DNA-bind_4 8.3e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g02060 - - gmx:100799917 454.907
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g02060 4 22904900 22906840 Vimu4g02060 4 22904900 22906840 ECH