Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g02059 ATGGACACGAAATCGTTAACAATCCGTACACTGGTCTCCTCCCTCGCTTCCTCCTCCGACCAAACCCGTCTCGCCGCCCTCCGCCACCTCCGCCGCACCTCCAACGAGGACCCCGCCGCCCGCCCTCTCATCTCCGCCGCCGGTGCCGTCCCCCTCCTCGCCGCCGCCCTCTACTCCCCCTCCCACCCCATCCAAGACCACGCCGCCGCCACCCTCCTCAACCTCTCCATCTCCGACCGCCACCCCCTCCTCTCCTGCCCCGCCCTCCTACCCGCCCTCGCCCACATCCTCTCCCGCCACGCCACCTCCTCCGCCCAATCCGCCGTCCAATCCGCGGCTGCCACCCTCCACAGCCTCCTCGCCGTGGTAGCCGAGTTCCGCCCCACCGTCGGTGCAAAACCCGAAATTCTTCGTGCCCTCATCAGCATAACGAGTGATCCCGATTCGCTGACGAGGACGATCAAGGATGCTCTGAAAGCATCTTTCGGAATTGCACTCTACCCGCCGAGCCGAACAGCACTGGTCCGGCTTGGCGCAGTTCCCGTGCTCTTCGCTCTGGTGGCGAAGGACAAGGACGGGAAGAGAAAAGTTGGCATAATTGAGGATGCGACGGCGGTGATCGCGCAGATTGCCGGGTGCGAGGAGAGCGAGGAGGCGTTTCTTAAGGTTTCGGGGGTTTCTAGGTTGGCCATGATGCTGTGTTCGGAAAGTGGAAACTGTAGTTTGAGGACAAAGGAGAATGCTGTTGCGGCGCTGTTGAATCTGGTGAGATATGGGAGTGAGAGAGTAGTTGGGGAAGTTAAGAACAAGGTTGGGTCCTTGGATGGGATCTCCTACGTGCAGGAACACGGTAGCCCCAAAGGGAAGAGCAAGGCCGTCGCTTTTTTCAAGCTTCTGCTTGATGGTGGAAGCAGTGCTGAAATTGCTCAAGATTTGTACCCTCTGCACTCTGATTCGGGTTCAAGTTGCCAGTGA 975 0.601 MDTKSLTIRTLVSSLASSSDQTRLAALRHLRRTSNEDPAARPLISAAGAVPLLAAALYSPSHPIQDHAAATLLNLSISDRHPLLSCPALLPALAHILSRHATSSAQSAVQSAAATLHSLLAVVAEFRPTVGAKPEILRALISITSDPDSLTRTIKDALKASFGIALYPPSRTALVRLGAVPVLFALVAKDKDGKRKVGIIEDATAVIAQIAGCEESEEAFLKVSGVSRLAMMLCSESGNCSLRTKENAVAALLNLVRYGSERVVGEVKNKVGSLDGISYVQEHGSPKGKSKAVAFFKLLLDGGSSAEIAQDLYPLHSDSGSSCQ 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g02059 324 SUPERFAMILY ARM repeat 7 300 IPR016024 -
Vimu4g02059 324 Gene3D - 2 297 IPR011989 -
Vimu4g02059 324 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 48 76 IPR000225 GO:0005515
Vimu4g02059 324 PANTHER U BOX DOMAIN-CONTAINING 8 299 - -
Vimu4g02059 324 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 178 225 IPR000225 GO:0005515
Vimu4g02059 324 FunFam ARM repeat superfamily protein 2 304 - -
Vimu4g02059 324 Pfam Armadillo/beta-catenin-like repeat 40 76 IPR000225 GO:0005515
Vimu4g02059 324 SMART arm_5 167 212 IPR000225 GO:0005515
Vimu4g02059 324 SMART arm_5 213 257 IPR000225 GO:0005515
Vimu4g02059 324 SMART arm_5 37 77 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g02059 Vimu-Chr4 22898882 22899856 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g02059 2 297 U-box Gene Family AT2G28830 27.090 8.79e-20 88.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g02059 - - gmx:100803111 480.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g02059 4 22898882 22899856 Vimu4g02059 4 22898882 22899856 ECH