Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g02052 ATGAGCATGTTAGGCCTTAGAGACCTAGTGCTCATAGCTCAAACACCTTCCCTGCACCAAGGCCAACCCATCTCAGAAAACCAAACTCCCAACCTTCCTCTTCCTTCTTCAGCCGCTCTCAGTGTTGGCTTTGGCATTTTCCCTCTCCTCACTGCCACACCCTGTGTGCCACACCCTCACCAAACCAATGAGATTCAAGACTGTGCTGCTGCTGCTGGTGGCAACACCAACACCACCACCACCACCAACTATTGGAACCTCAAGATGTGCCCAGAAGTGAATCATCCGAAGAAGGGTGTGATCAACATGGATGATGATGATGATGAGGACGACGAGAGACATCATCACCATAAGGGTGTGTTGGAGAGCGAAGAAAACGGAATTTATGGACCTGACTTCCGGGTGTGTCAAGATTGTGGCAACAGGGCCAAAAAAGATTGCATCTTTAGAAGATGCAGGACTTGTTGCAAGGGACGTGGATACGATTGCAGCACTCATGTGAAGAGCACGTGGGTCCCTTCAATTCGCCGCCGGGAGCGGGAAATGGTGGTGGCTCCCGCCGGAGGCGTTGGTGTTGGCAGTAAGAGGCCAAGAGCTATAGTGGGTTCCTCACAAAATGCCACTGCCACTTCTTACAGCTCCAACTCCAATGCTACAACACCTAAAAGCTTAGCCACAATCTCTTCTCACCAAGATGCTAGCTTCAAACAGTCTTTACCTGGTCATGTTCGTGCACCTGCAGTTTTCAAGTGTCACAGAGTCTCTGCCATTGGGAATGGTGAAGATGAGTTTGCCTACTTGGCAACGGTGCACATCAGTGGCCATGTGTTCAAAGGGTTTCTCTATGACCATGGAGTTGATGGGAAAATTGCAAATGCAGTGCCTTGTGTTTCGGAATTGCAACTGGGAAACAATTGCAGTGGCAAGAACAGAGAATGTTCTTCTGCCATTGGACTTCCAAATAACAATGCATACCCTGCTTCTGCCACCTGA 993 0.4945 MSMLGLRDLVLIAQTPSLHQGQPISENQTPNLPLPSSAALSVGFGIFPLLTATPCVPHPHQTNEIQDCAAAAGGNTNTTTTTNYWNLKMCPEVNHPKKGVINMDDDDDEDDERHHHHKGVLESEENGIYGPDFRVCQDCGNRAKKDCIFRRCRTCCKGRGYDCSTHVKSTWVPSIRRREREMVVAPAGGVGVGSKRPRAIVGSSQNATATSYSSNSNATTPKSLATISSHQDASFKQSLPGHVRAPAVFKCHRVSAIGNGEDEFAYLATVHISGHVFKGFLYDHGVDGKIANAVPCVSELQLGNNCSGKNRECSSAIGLPNNNAYPASAT 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g02052 330 MobiDBLite consensus disorder prediction 202 222 - -
Vimu4g02052 330 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 75 316 IPR007818 GO:0003700|GO:0006355
Vimu4g02052 330 NCBIfam putative zinc finger domain, LRP1 type 135 177 IPR006510 -
Vimu4g02052 330 NCBIfam LRP1 C-terminal domain 239 286 IPR006511 -
Vimu4g02052 330 MobiDBLite consensus disorder prediction 104 124 - -
Vimu4g02052 330 Pfam Domain of unknown function (DUF702) 135 287 - -
Vimu4g02052 330 MobiDBLite consensus disorder prediction 104 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g02052 Vimu-Chr4 22873400 22874671 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g02052 136 325 C2H2 Transcription Factor Family AT5G12330 52.709 5.50e-53 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Vimu4g02052 DUF702 2.4e-54 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g02052 - - vun:114175485 585.874