Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g02049 ATGTTGTCTCTGCTTGCAACTCATTCTCTTCTCACTTGTTCAACTCGCACAAACGAAAATGGTGAAGCTCAGAGGTTCTACCACCTATCTCATGTTGGTCACTACTTCGTCAAAGATCAAAGCAAGGGCTCTCTGGCTCCCCTATCAACTTTTCTTAGTTACCCTTCCATCGCCCATGAAGCATTTTTGGACTTTGAGAAGGGATTGTACGAGAAAGTTCATGGAATGCCTATTTATGAAGGCATATGCTCAGATTCCACACTAAGGATAGAGCAAGTTGAAGGAAACATGTTTGAAAGTGTTCCACAAGGTGATGCTATAATATCAAAGGCAGTGTTACACAATTGGTCGGATGAAAAATGTGTAGAAATTTTAAAGAATTGCTACAAAGCTTTGCCAGAAAAGGGAAAGGTAATTGTTATGGAGATCATAATGCCTGAAGCAATTCACTCAACAGATGCAGATAAAATGGTGACTGGCTTTGACAACCTTATGTTTTTGGATGCTGGCACCGAAAGAACTGAGAAACAATTTCACAATTTATCCAAACTCTCAGGATTTTCTCATTTTCAACTTGTTTGTCGTGTCTTCTAA 594 0.3939 MLSLLATHSLLTCSTRTNENGEAQRFYHLSHVGHYFVKDQSKGSLAPLSTFLSYPSIAHEAFLDFEKGLYEKVHGMPIYEGICSDSTLRIEQVEGNMFESVPQGDAIISKAVLHNWSDEKCVEILKNCYKALPEKGKVIVMEIIMPEAIHSTDADKMVTGFDNLMFLDAGTERTEKQFHNLSKLSGFSHFQLVCRVF 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g02049 197 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 1 197 IPR016461 GO:0008168
Vimu4g02049 197 Pfam O-methyltransferase domain 88 188 IPR001077 GO:0008171
Vimu4g02049 197 Gene3D Vaccinia Virus protein VP39 89 196 IPR029063 -
Vimu4g02049 197 Gene3D - 1 72 IPR036388 -
Vimu4g02049 197 PANTHER O-METHYLTRANSFERASE 90 187 IPR016461 GO:0008168
Vimu4g02049 197 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 89 193 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g02049 Vimu-Chr4 22814223 22815879 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g02049 90 197 Monolignol Biosynthesis Gene Families AT5G54160 51.818 1.18e-31 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g02049 K13066 - gmx:100784030 168.318