Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g02048 ATGGCTGCAGAGGCACAGTTTCATGTTTTGGCTGTCGATGATAGCCTTATCGACAGAATGTTGATTGAGAGACTCCTCAAAACATCTTCTTTTCATGTTACTGCTGTGGATTCTGGTAGTAAGGCTTTGAGGTTTCTTGGTTTGGTTGAAGATGAGAAGAGAACTGAAGAGCCTCCCACCATTGCTTTAGAAGCCAATCAGGATGTAGAAGTAAACCTGATCATAACTGATTACTGTATGCCAGAAATGACAGGGTATGATCTGCTGAGAAAAATCAAGGAATCTAAATCTCTTAAAGACATACCAGTGGTGATTATGTCCTCAGAGAATGTTCCATCAAGGATCAACAGATGCCTAGAAGATGGAGCTGATGAATTCTTTTTGAAACCAGTTCAACAGTCAGATGTAAACAGGCTCAGACCTCATCTGATGAAATCAAAAGCTAAGGATGAAGAAGAGGAACAGATCAATAACAAAAGGAAGGAAACAGAAGAAGAAGAAGAAGAAAAGCATTCCCCAGATAAAACCAGGACAAAAATGGAGCCTCAAAAAGTGGTTAATTGA 564 0.3972 MAAEAQFHVLAVDDSLIDRMLIERLLKTSSFHVTAVDSGSKALRFLGLVEDEKRTEEPPTIALEANQDVEVNLIITDYCMPEMTGYDLLRKIKESKSLKDIPVVIMSSENVPSRINRCLEDGADEFFLKPVQQSDVNRLRPHLMKSKAKDEEEEQINNKRKETEEEEEEKHSPDKTRTKMEPQKVVN 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g02048 187 ProSiteProfiles Response regulatory domain profile. 8 144 IPR001789 GO:0000160
Vimu4g02048 187 SUPERFAMILY CheY-like 7 142 IPR011006 -
Vimu4g02048 187 PANTHER TWO-COMPONENT RESPONSE REGULATOR 7 170 IPR045279 GO:0009736
Vimu4g02048 187 CDD REC_typeA_ARR 9 139 - -
Vimu4g02048 187 MobiDBLite consensus disorder prediction 140 181 - -
Vimu4g02048 187 Coils Coil 145 169 - -
Vimu4g02048 187 SMART REC_2 7 143 IPR001789 GO:0000160
Vimu4g02048 187 MobiDBLite consensus disorder prediction 138 187 - -
Vimu4g02048 187 Pfam Response regulator receiver domain 9 136 IPR001789 GO:0000160
Vimu4g02048 187 Gene3D - 8 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g02048 Vimu-Chr4 22801862 22802962 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g02048 1 161 Response Regulator Gene Family AT3G57040 64.815 8.85e-71 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vimu4g02048 Response_reg 5.2e-19 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g02048 K14492 - gmx:100818762 288.885