Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g02044 TACGCTCTCCGGTTCCTTCCCACAATGTCCAGCGACACCTCCTTCGCGGACCACAAGCTCTGCGGTTTCCTCTTTGCGGTTCTTACAGCCACTGACCGGGACTCCGATCCAGCCTTCGCTGAGCGCTGTGAAATCTTAAGCGACGGGGGCGAGGTTGGGTTCCGCTCCCAAACCGGCGTCGTTTTGTCTACGGTGCTGAATTCGTCTCAATGCGGCGGCGGCGGTGGAGGATCGAAAACCAAGAGGACGCACAGCGTTGGGATGGTGAATGGGAGCATGAGCGTGGTTCACCAGCTCCACGCTATGGTCACTCGCAAGTGCGCCAAAGTTGACGCACGCGTGGTGTGCGTCGAGTCGCCTAGGGTTGTGCTGCTGGTTGACGTGTATCTTCCTATTCAAGTGTGGAGTGGCTGGCAGTTCCCGCGGTCGGGGGCAGTTGCCGCCGCCGTTTTTCGTCATTTGAGGTTCTCATCTTCTCGCATCGGCATTCCTTTGTGTTGTGTTCCAGAAATTGTTACTGGTTTAGTGCAATTTGTTAGAAATGTTTGCAGCTGTGATTGGGATGAGCGAAGTTCAATGCTTTCATATCCAGACTATTGTAGAAAGACTCATGGAGCAAACGAGAGCATTTGGAACCTTTCTGATTGTCATGTACTTTGTTGCAAGCTCCATCCCCATGTTAGCAGTTCTTCAAGGAAAAGCCTATTTGAACTTCATGAACTTTTCAAGACACTACCTGGCATAGGAAAACAGCGGATGTTTAATAGCTCCAAAATAATTCCTATGGATCACTCATGCAGAGCAGGCATTTGGGAGTTATCTGATGATATTTTAACAAAAATTTTATCTTCCCTTGACCCAATGGACCTCACTAGGGTTTCTGAAACGTGTCATCATCTAAGATCATTGGCTGCTTCTGTAATGCCTTGTACAAAGTTAAATCTGTTTCCTCATCAGCAGGCAGCAGTTGAGTGGATGTTGCATCGTGAGCGAAATGCTGAGCTTTTGCCACACCCTTTATATGCATTTCTCTCAACTGAAGATGGTTTTAGTTTCCATGTAAATACCGTTTCTGGTGAAATTGTCACTGGGGAAGCTCCCACCATCAGGGATTTTCGAGGAGGAATGTTTTGTGATGAGCCTGGTTTGGGTAAGACTGTAACGGCACTCTCTCTTATTATGAAGACACGAGGTACATTGGCAGATCCACCAGTAGAGGCACAAGTTGTCTGGTGTCAACATAATGGTAATCAGAAATGTGGTTATTATGAGATCTGTGGTAATAACATAACTGGTTGTTCTGCATTGGGTAAAAGGAACGGGAGCCAATATATCAGTAGAACTAATGATAACCATGAATACTCCTCCAAAAGAGCCAGAATGTCAAATCCTGACCAGCAAATGATTAAACTTCAGAGTTCATGTTCCATGGAAGTAAACAAATCACCTGTGGAGGCACGCTTTAAGGAATCTATGCATTCAAATCAGTACACTAGGAGTTTGAGCCGCATAAAGAAAAATCTATGCTTCACAAATGAAGAGGAAGCTATGATATCCAAGGAAAGAGAAATTGAAGGATTAATTAAAGCAAAGCATGCATCAGATGTTACACCTCATTTATCTCAAAAGAAGCTGCCTGGGAAGCCTCAAGGTGATCCTTTTGAGTACAGTGATACATGGATTCAGTGTGATGCTTGTCACAAGTGGCGAAAGCTGGCAGACAATAGTATGGCTAGTTCTAGTGCAGCATGGTTTTGTAGTATGAACCCTGACCCTCTTTATCAAAGTTGTAGTGTCCCTGAACAACATTTTCGTTCTACATCTAGGATAACATACTTGCCAGGGTTTCACTTAAAAGGGACTCATGGTGGTGACAGACAAAATGTTTCTTTTTTCACCAGCGTGCTTAAGGAGCACTACTCACTGATAAATTCTCAGACAAAAAAAGCCCTGGCCTGGTTGGCTAAAATTTCAACAGACAAGCTTGCAGCTATGGAAACAAATGGAATAAGAGGTCCTATTTTAAACACGTGTACTGCATCTGGCAGACATTTTAATGCCTTCCACAAAGTATTTCAAGCATTTGGCCTCTTAAAGAGAGTAGACAAAGGTGTGTGCAAGTGGTTCTATCCTCAACATCTTAACAATTTGACTTTTGATGTGGCTGCCCTTGGCATGGCACTCCGTGAGCCTATAGATTTTGTCAGGTTATACTTGTCAAGGGCTACCCTGGTAGTTGTTCCAGCAAACTTGGTTGATCATTGGAAAACACAAATAGAAAAGCATGTGAGGCCCGGTCAATTGCGGATTTATGTTTGGACTGATCACCGGAAGCCATCTGTGCATTGTCTTGCATGGGATTACGACATTGTCATAACCACTTTTAGTCGTCTGAGTGCAGAGTGGGGCCCTCGTAAGAGGAGTGTTTTGATGCAAGTACATTGGTTTCGGGTAATTTTAGATGAGGGGCACACTCTTGGGTCTAGCCTCAACTTAACAAACAAGTTGCAAATGGCCATTTCATTGATAGCTTCTAATCGATGGATACTAACAGGAACTCCTACACCTAACACTCCTAACAGCCAACTTCCACATCTGCAAACATTGCTAAGGTTCCTTCATGAGGAATCTTATGGACTGAATCAAAAGTCATGGGAAGCTGGTGTGCTCAGGCCATTTGAAGCAGAAATGGAGGAAGGGAGGTCTCGTCTGTTAGATCTGCTTCACAAATGCATGATTAGTGCTAGAAAGACAGATTTACAAAGCATCCCACCATGCATCAAGAAAGTTGTTTATCTGGATTTTAATGAGGAGCATGCTAGAAGTTACAATGAATTAGTAATCACTGTAAGGCGTAATATATTGATGGCTGATTGGAATGATCCCTCACATGTTGAGAGTCTTCTGAATCCGAAGCAGTGGAAGTTTCGTAGGGCAACTATAAAAAATGTCAGGCTTTCGTGCTGTGTTGCTGGACATATTAAGGTTACACATGCTGGTGAAGATATTCAAGAAACAATGGATATGTTAGTACAAAGTGGTTTGGATCCTACTTCTGGAGAGTATACCTCCATAAGATGTAATCTCTTGTATGGTGGTCACTGTGTCAGGTGCAAGGAATGGTGCCGCCTTCCAGTCATTACACCATGTCGGCATTTATTGTGCCTTGATTGTGTTTCTATTGACCATACGAAGTGTACTTATCCGGGCTGCAGTAAATTGTATGAGATGCAAAGTAGACTTCCCCGACCTGAAAATCCTAATCCAAAGTGGCCTGTACCCAAAGATCTTATTGAGCTACAACCGTCATATAAGCAGGCATGGTTTATGAAGAGCTCAGATAATTGGGATCCAGATTGGCAATCTACATCTAGTACTAAAGTCTCCTATCTTGTCCAGAAGTTGAAAGCCTTGCAAGGAACCAACGAAGAGACCAGCTTCTGTACAGACAATAACAATGATGAGATGCCTATTGAGAATAGTTTCTCTCTGCATAGAAGTGATGATAAATCAGCATTTGAAAAATGTTTGAAGAGCGGCAGAAAAACCAATTCTAACCTTGAGAAAGTTCTTATATTTTCTCAATTTCTTGAGCATATACATGTCATTGAACAGCAGTTAGCTATTGCTGGTATCAAATATGCTGGAATGTATAGCCCAATGCATTCCAGTAACAAGAAGAAGTCTTTAGCCACGTTCCAGCATGATTCAAGTTGTATGGCGCTTCTAATGGATGGAAGTGCTGCATTGGGTCTGGACTTGAGTTTTGTTACCCATGTATTTCTAATGGAGCCAATTTGGGACAGAAGTATGGAGGAGCAAGTAATTAGTCGTGCTCATCGAATGGGTGCTTCTCGTCCTATTCACGTTGAAACACTAGCAATGCATGGTACAATTGAAGAGCAAATGCTAGGCTTTTTACAGCATAGTGGTTTTCAGAGAAGGGTCAACTTTGATGATAAGGTTGTGTTAAAGGACGTGGTGGCTGTTGGAGAGAAAAAGTTGCTAGGAGGATGTGGTGACTGCAGAAGACCAAAACTGGTACGAGGATGTGACAGTTGTCTGAGAGCAAAGGTGCTTGGAAGGTGTGACTACTCTGTAGCAAAAATGGAAGCTGATAAATGTAGAAGATCGCCAATTAAGGATATTGCGGAATCTGAGGATGATGGCGGGGGACGAGGATATAAATCATTGCATGATTTTGCTGAAAGCAGTTATCTATTGAAATTAAGATCTGTGTTTACTAATTCAGAATGTCCAGAAGGTTTGTTCACAGTGTTTTCCCCATATCTGTTAGGAAATATGGATTTAGCAGAAAGATGA 4323 0.431 YALRFLPTMSSDTSFADHKLCGFLFAVLTATDRDSDPAFAERCEILSDGGEVGFRSQTGVVLSTVLNSSQCGGGGGGSKTKRTHSVGMVNGSMSVVHQLHAMVTRKCAKVDARVVCVESPRVVLLVDVYLPIQVWSGWQFPRSGAVAAAVFRHLRFSSSRIGIPLCCVPEIVTGLVQFVRNVCSCDWDERSSMLSYPDYCRKTHGANESIWNLSDCHVLCCKLHPHVSSSSRKSLFELHELFKTLPGIGKQRMFNSSKIIPMDHSCRAGIWELSDDILTKILSSLDPMDLTRVSETCHHLRSLAASVMPCTKLNLFPHQQAAVEWMLHRERNAELLPHPLYAFLSTEDGFSFHVNTVSGEIVTGEAPTIRDFRGGMFCDEPGLGKTVTALSLIMKTRGTLADPPVEAQVVWCQHNGNQKCGYYEICGNNITGCSALGKRNGSQYISRTNDNHEYSSKRARMSNPDQQMIKLQSSCSMEVNKSPVEARFKESMHSNQYTRSLSRIKKNLCFTNEEEAMISKEREIEGLIKAKHASDVTPHLSQKKLPGKPQGDPFEYSDTWIQCDACHKWRKLADNSMASSSAAWFCSMNPDPLYQSCSVPEQHFRSTSRITYLPGFHLKGTHGGDRQNVSFFTSVLKEHYSLINSQTKKALAWLAKISTDKLAAMETNGIRGPILNTCTASGRHFNAFHKVFQAFGLLKRVDKGVCKWFYPQHLNNLTFDVAALGMALREPIDFVRLYLSRATLVVVPANLVDHWKTQIEKHVRPGQLRIYVWTDHRKPSVHCLAWDYDIVITTFSRLSAEWGPRKRSVLMQVHWFRVILDEGHTLGSSLNLTNKLQMAISLIASNRWILTGTPTPNTPNSQLPHLQTLLRFLHEESYGLNQKSWEAGVLRPFEAEMEEGRSRLLDLLHKCMISARKTDLQSIPPCIKKVVYLDFNEEHARSYNELVITVRRNILMADWNDPSHVESLLNPKQWKFRRATIKNVRLSCCVAGHIKVTHAGEDIQETMDMLVQSGLDPTSGEYTSIRCNLLYGGHCVRCKEWCRLPVITPCRHLLCLDCVSIDHTKCTYPGCSKLYEMQSRLPRPENPNPKWPVPKDLIELQPSYKQAWFMKSSDNWDPDWQSTSSTKVSYLVQKLKALQGTNEETSFCTDNNNDEMPIENSFSLHRSDDKSAFEKCLKSGRKTNSNLEKVLIFSQFLEHIHVIEQQLAIAGIKYAGMYSPMHSSNKKKSLATFQHDSSCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGASRPIHVETLAMHGTIEEQMLGFLQHSGFQRRVNFDDKVVLKDVVAVGEKKLLGGCGDCRRPKLVRGCDSCLRAKVLGRCDYSVAKMEADKCRRSPIKDIAESEDDGGGRGYKSLHDFAESSYLLKLRSVFTNSECPEGLFTVFSPYLLGNMDLAER 1440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g02044 1440 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 717 872 IPR014001 -
Vimu4g02044 1440 Pfam F-box domain 272 307 IPR001810 GO:0005515
Vimu4g02044 1440 CDD F-box_SF 272 304 - -
Vimu4g02044 1440 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 740 912 IPR027417 -
Vimu4g02044 1440 Gene3D - 721 917 IPR038718 -
Vimu4g02044 1440 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 184 1306 - -
Vimu4g02044 1440 Gene3D - 1099 1335 IPR027417 -
Vimu4g02044 1440 Pfam SNF2-related domain 318 958 IPR000330 GO:0005524|GO:0140658
Vimu4g02044 1440 CDD SF2_C_SNF 1188 1293 - -
Vimu4g02044 1440 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 305 397 IPR027417 -
Vimu4g02044 1440 ProSitePatterns Zinc finger RING-type signature. 1050 1059 IPR017907 -
Vimu4g02044 1440 SUPERFAMILY F-box domain 264 306 IPR036047 GO:0005515
Vimu4g02044 1440 ProSiteProfiles F-box domain profile. 267 319 IPR001810 GO:0005515
Vimu4g02044 1440 SMART helicmild6 1201 1283 IPR001650 -
Vimu4g02044 1440 ProSiteProfiles Zinc finger CW-type profile. 554 605 IPR011124 GO:0008270
Vimu4g02044 1440 SMART ultradead3 311 883 IPR014001 -
Vimu4g02044 1440 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1168 1328 IPR001650 -
Vimu4g02044 1440 Pfam Helicase conserved C-terminal domain 1182 1283 IPR001650 -
Vimu4g02044 1440 CDD DEXDc_SHPRH-like 736 913 - -
Vimu4g02044 1440 Gene3D - 555 607 - -
Vimu4g02044 1440 Pfam CW-type Zinc Finger 559 602 IPR011124 GO:0008270
Vimu4g02044 1440 SMART fbox_2 273 313 IPR001810 GO:0005515
Vimu4g02044 1440 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 814 1315 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g02044 Vimu-Chr4 22733173 22743376 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g02044 742 1303 RAD5 or RAD16-like Gene Family AT5G22750 25.083 4.33e-42 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vimu4g02044 SNF2_N 6.6e-99 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g02044 - - gmx:100803102 2199.09