Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g02025 ATGAGGTCAAATAGCAATGAATCCCAAAATTTTGAAGGATCATCAGATAATTGCTTTTGTTATCAAGAATGTTTGATTCATGAGAATGATCATAATGCTTCTTATTCACCACATCTCGCAAACTACAGAAACTATGTCCTATATCACAGTGAAGAACGTATTGAAAAAAAACTCACAAAGAGTGATGTGAATGTTAATTTAAATAGACTTCTTTTCAATAAAAAAGAAGTTGAAAAATATTTTTTACCAATGTTGAAAGCTGAGGATGATATAGAAGAGGGAGTAGAGGTTTGTGCCTACGATGATGATGGTAATCTTTATTCTCTGATATTCAAGAAGTGGGCAAACAAATACTATGTGTTGAATGGTGAGTGGAAAATTGTCTTCGAAAATCATAAATTACAAATCGATGATATGATCAAAACGTGGATGTTTCGTCATTCAAAACATACAAAATTATGTCTCGCACTTGAATTTGAGAAGATTGAAAGACAGTCATAG 501 0.3174 MRSNSNESQNFEGSSDNCFCYQECLIHENDHNASYSPHLANYRNYVLYHSEERIEKKLTKSDVNVNLNRLLFNKKEVEKYFLPMLKAEDDIEEGVEVCAYDDDGNLYSLIFKKWANKYYVLNGEWKIVFENHKLQIDDMIKTWMFRHSKHTKLCLALEFEKIERQS 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g02025 166 CDD B3_DNA 53 149 IPR003340 GO:0003677
Vimu4g02025 166 Pfam B3 domain-containing protein At2g31720-like 49 129 IPR005508 GO:0003677
Vimu4g02025 166 PANTHER B3 DOMAIN PLANT PROTEIN-RELATED 53 159 IPR005508 GO:0003677
Vimu4g02025 166 SUPERFAMILY DNA-binding pseudobarrel domain 54 155 IPR015300 -
Vimu4g02025 166 Gene3D - 48 159 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g02025 Vimu-Chr4 22578262 22578762 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g02025 54 161 B3 DNA Binding Superfamily AT4G03170 35.455 2.48e-17 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g02025 - - pvu:PHAVU_005G028900g 201.445