Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g02010 ATGGAAATCGTGGAAAAGAGAAAATTTTCTAAACTGTTGTCAGAGCTGATAGTTTTGGCCGATGAGGTTGCTTCTCTAGCTAAGAACTCTGAAATTGAGGTACATATTTTTTCTGAGTTTGCCATGTTGGTTGAGAAATTCTCACCAATCTTCAATGACTTGAGAGACAAAAACACAGTCTTGGACAAGCCACCTATAAGAAAATCCTTGGAATCTCTTGAGAATGAGCTGAGGCGTGCCAAAGCTTTGACAAAAAGCTCGAATTTGAAGCAACCCATCAAGCAAATTGAGGACATAACACATGACATAGGTCGATCCTTTGGCCTTCTGCTCGTAGCCAGCCTCGAAATTTCCGTGGATTTCAGAGAAAAGATTGGTACATTGCAAAGACAGTTGATGAATGTGAGATTTGATGGCAGTTTAAGTGTAGCTTCAAGTCCAAAATCAGAGGTTTCCGGCAGTGAAGTGAAGCTGACTGCAGAAATAGAAGAGGAAATAGTTAATGTTTCTATTGCTGATGTTGTTTTGCAACTTAAGAATGGTAATGATGAAGAATTTGCAGTTTCACTTTTGAGACTGAAGGAGTTCATAAATAGTGAAGGATTTGATACTGGTTTGATCAACGAGGAAGCAGCTCTTTCCATTCTTTTCAACCGTCTAGGTTCGTGTAAGGCAGACAACAGGTTAGCAATCATGCGGTTGCTAAGAAGTATTGCTTCAGGAAATGATGAGAAAAAGGAGAAGATGGTAGATATTGATTTCTTATCAGCAGTGGTGAAGTCACTCACAAGAGATTCAGAGGAGAGGAAGGAAGCAGTAGGGCTGTTGCTAGAGCTCTCTGACATTCAGGCCGTTCGCCGGCGAATAGGAAGAATTCAAGGCTGCATTGTTATGTTAGTTGCTATCCTTAATGGGGATGACCCTGATGCCTCAAATGATGCTGCAAAGTTATTGGATATATTGTCTAGTAATTCTCAAAATGCACTTCATATGGCCGAGGCTGGCTACTTTAGGCCACTAGTGCAGTATTTGAAAGAAGGATCTGACATGAACAAGATCCTAATGGCGACAGCACTTTCAAGGTTGGAACTCCCTGATCACAGTAAGCTTTCCCTTGGAGAAGATGGGGCAATTGAGCCCCTTGTCAACATGTTCAGCACAGGGAAACTCGAGTCCAAGTTATCAGCTCTAAATGCGCTGCAAAATCTGTCAACCGTGGCAGAAAATGTGCAGCGTTTGATCAGATCAGGAATTTCAGGATCTCTGCTACAACTTCTTTTCTCAGTTACATCTGTGCTCATGACATTGCGTGAGCCTGCATCAGCCATTCTTGCAAGAATTGCTCAGTCTGAATCCATCCTTGTGAACGAAGATGTGGCTCAGCAGATGCTTTCACTTTTGAATCTTTCCAGTCCCATTATCCAGGGCCATTTGTTAGAAGCTCTAAATAACATAGCCTCCCACCCTGGTGCATCCAGAGTGAGAAGCAAAATGAAGGAAAAAGGTGCACTTCAGCTGCTCTTACCCTTTCTGAAGGAAAACACCACCAAAGTCAGGAGCAAGGTCTTGCATCTTTTGTACACTCTCTCTAAAGATCTAACAGACGAGTTAACTGAACATCTTGATGAAACTCACCTCTTAAACATAGTCAATATAGTCTCAACATCAACATCAGACAGTGAAAGGGCTGCAGCTGTTGGCATACTGAGTAATCTTCCTGCTAGTAACAAAAAGGTGACTGATATACTGCAGAGGGCAAATTTGCTGCCAATTTTAATATCCATCATGTATACTATCTCAGGAAGTAACTCATCCACAACAAATAGCTTAGCAGAGAGTATTGCCAGTGTTATCATTCGCTTCACCAATTCCTCTGACAAAAAACTACAACTTCTTTCAGCCGAACAAGGGGTGATTCCTTTGCTTGTGAAACTGCTCTCAAGCGGTTCACCAATCACAAAAGCAAGGGCTGCAGTCTCACTGGCTCAACTATCTCAGAATTCTCTGTCTCTTAGAAAGTCTAGAAAGTCAAGGTGGTTGTGTGTTCCTCCCTCGGTGAACGCATTTTGTGAAGTTCATGATGGATTTTGCTTTGTAAACAGCACGTTTTGTTTGGTCAAGGCAGGTGCTGTTTCTCCCCTCATCCAACTGTTGGAAGATACTGAGAGAGAAGCAGTTGAAGCTGCTTTGCATGCTCTTTCAACTCTTCTGCAAGATGAAATCTGGGAAGGTGGTGTCAGTTGCATTGCCAAGTTATCTGGTGTGCAAGCCATCATAAAAAGTCTTGAAGTTGGCGATGCAAAGGTTCAAGAAAAAGCAATATGGATGCTGGAGAGAATATTCAAAGTTGCAGAACATAGAGTTAAGTATGGAGAATCTGCTCAGGTGGTTCTTATTGATCTTGCCCAGAAGAGTGATTCTAGATTGAAGTCAACAGTTGCAAAAGTTTTAGCTGAGCTTGAGCTCTTGCAATCTCAGTCAAGTTACTTTTAA 2493 0.42 MEIVEKRKFSKLLSELIVLADEVASLAKNSEIEVHIFSEFAMLVEKFSPIFNDLRDKNTVLDKPPIRKSLESLENELRRAKALTKSSNLKQPIKQIEDITHDIGRSFGLLLVASLEISVDFREKIGTLQRQLMNVRFDGSLSVASSPKSEVSGSEVKLTAEIEEEIVNVSIADVVLQLKNGNDEEFAVSLLRLKEFINSEGFDTGLINEEAALSILFNRLGSCKADNRLAIMRLLRSIASGNDEKKEKMVDIDFLSAVVKSLTRDSEERKEAVGLLLELSDIQAVRRRIGRIQGCIVMLVAILNGDDPDASNDAAKLLDILSSNSQNALHMAEAGYFRPLVQYLKEGSDMNKILMATALSRLELPDHSKLSLGEDGAIEPLVNMFSTGKLESKLSALNALQNLSTVAENVQRLIRSGISGSLLQLLFSVTSVLMTLREPASAILARIAQSESILVNEDVAQQMLSLLNLSSPIIQGHLLEALNNIASHPGASRVRSKMKEKGALQLLLPFLKENTTKVRSKVLHLLYTLSKDLTDELTEHLDETHLLNIVNIVSTSTSDSERAAAVGILSNLPASNKKVTDILQRANLLPILISIMYTISGSNSSTTNSLAESIASVIIRFTNSSDKKLQLLSAEQGVIPLLVKLLSSGSPITKARAAVSLAQLSQNSLSLRKSRKSRWLCVPPSVNAFCEVHDGFCFVNSTFCLVKAGAVSPLIQLLEDTEREAVEAALHALSTLLQDEIWEGGVSCIAKLSGVQAIIKSLEVGDAKVQEKAIWMLERIFKVAEHRVKYGESAQVVLIDLAQKSDSRLKSTVAKVLAELELLQSQSSYF 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g02010 830 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 376 418 IPR000225 GO:0005515
Vimu4g02010 830 SUPERFAMILY ARM repeat 172 428 IPR016024 -
Vimu4g02010 830 Gene3D - 204 331 IPR011989 -
Vimu4g02010 830 SMART arm_5 626 666 IPR000225 GO:0005515
Vimu4g02010 830 SMART arm_5 242 281 IPR000225 GO:0005515
Vimu4g02010 830 SMART arm_5 365 405 IPR000225 GO:0005515
Vimu4g02010 830 SMART arm_5 698 738 IPR000225 GO:0005515
Vimu4g02010 830 SMART arm_5 742 782 IPR000225 GO:0005515
Vimu4g02010 830 SMART arm_5 324 364 IPR000225 GO:0005515
Vimu4g02010 830 SMART arm_5 491 531 IPR000225 GO:0005515
Vimu4g02010 830 Coils Coil 70 90 - -
Vimu4g02010 830 Gene3D - 696 828 IPR011989 -
Vimu4g02010 830 Gene3D - 332 677 IPR011989 -
Vimu4g02010 830 SUPERFAMILY ARM repeat 372 784 IPR016024 -
Vimu4g02010 830 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 164 830 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g02010 Vimu-Chr4 22485646 22488844 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g02010 215 830 U-box Gene Family AT1G76390 29.439 6.19e-49 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g02010 K08332 - gmx:100791453 1348.18