Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g02002 ATGAAGTTGGAGTCAGTTGGAAACAATCCAAGCAGTTGCCAACTACATCCTTGGTGGATGAATCTAGCATTTGTGGTAGAGAGGGTGCCCATAATTAGTATAGTTGGAATGGGAGGGATGGGTAAGACCACCCTTAGTCAGCTTGTGTATAATGACCAAAGGGTACTAGAACAATTTGACCTTAAAGCTTGGGTCTATGTTTCACAAGATTTTGATGTTGTTGCTATCACAAGAGCAATTCTTAAGCAGAGACTGATGGGAAAGAGATATTTCCTTGTCCTAGATGATGTTTGGAACGAAGACTATTCAAGTTGGGGGGTACTGCAGATCCCCTTCATTTATGGACCTTCAGGAAGTAGGATTCTTATTACCACTCGTAATGAGAAGCCATTGGAGAAAGAAGATTGTTGGAAGCTATTTTCAGATGTTGCTTTTCATGACAAGGATGCCACCAAATATCCATATCTTGTATCAGTTGGCAGTAAAATTGTTGACAAGTGTGGAGGATTGCCTTTAGCTTTGAAAGCATTGGGAAATATCTTGCGAGTGAAATTCTCCCAGCATGAATGGGTTAAGTTTGACAGAGATCAGCTAATCCAACTGTGGATGGCAGAAGGTTTGTTGAATTGCTGCCAAATAAACAAGAGTGAAGAAGAGTTAGGCGCTGAGTTCTTCAATGATCTAGTAGCAAGGTCATTTTTCCAACAATCAAGACGCCGTGCTTCGTGCTTCACTATGCATGATCTTCTTAATGATTTAGCAAAATCTGTCTCAGGAGAATTTTGTTCACAAATAAGTGGCAGTTTGGAGAAAATTATAACCAAGAGAGCACGCCACATTTCATGGTCTAGCAAAATTAACATTGATGATAAATTCTTGGAGCATATCAGTAATTGTCTTCTCACTGAATTAGTTGATGATATAGGCAATTTAAAGCTTTTGCGTTATTTAGACCTTTCGTACACTAAGATTAAAAGACTGCCTGACTCCATTTGTAGGCTGCATAATTTGCAGACACTGATACTATTATGGTGCTATCATTTGGATGAGCTTCCCATAGATTTGCACAAACTTGTCAACTTGCGTCATCTTGATTTGCGTATGAGCGGGATAAACAAGATGCCAAACCACATAGGAAGGCTGAAAGATCTTCGCACACTGACTAGAACACTTTCAATTTTCTGGTTGGAAAATGTCACCGATCCTGCGGATGCCATGGAAGCTAATCTGAAAGGTAAAAAGCATTTAGATGGATTAGTGTTGAATTGGGGTAACAAATTTGGAAGGTGCAATGAAAATGAGGACTCAATAATAGAAAGACAGGTGTTGGAGGCTCTTCAACCAAATGAGGTCATTGGTCCTGAGTTCTGTGGTAATGATTCCTCAAATATTCCTTTCAGATCTCTTGAAATATTGAAATTTGAGGAAATGAGTGCATGGAAAGAATGGTGCAGTTTTGAAGGTCATAGTGAAGAAGGCCAAGGTTTGTCTTGTCTTAAAGAGAAATTGGAAATTTGTGAATGCCAACACTTGGAGGATTCAGTTCCCAAGGCTGTAAGTATTCATGAGGTGAAGTTCCGTTTGTGTGAAAAACTTTTCCTGAAAGATTTGCCATCCAGCTTGAAAAAGGCCACAATTCATGGAACTTGCATTATTGAGGCCTGCATCCACCAAATTCTTGTCAACAATCCCTTCCTTGAAGAGTTGAAAATCCACAACTTTCATGGTCCAAATAAAAAATGGTCCTCTTTGGATTTGCACAGACAAGATTCTCTTGTCACTCTCTCTATAACAAGCTGGTACTCTTCCTCTTTGCCCTTTGCACTACACTTGTTTTCCAATCTTCATTCTCTACTTTTTCATGATTGTCCATATCTTGAATCATTTCCCGAAGGGGGTTTGCCTTCAAGCCTACGCAAACTCGAAATTGAGGATTGTCCCAAGCTGGTTGCTTCTAGGGAGAAGTGGGGATTGTTCAAACTCCATTCTCTCACAGATTTAAGAGTTAGTGATGACTTTGAAAATGTGGAGTCTTTCCCAGAGGATGGATTGCTACCACCCACTCTCAATGTGCTCTACTTAATTGGGTGTTCAAAGCTAACAAACACAAACTATATGGGTTTGCTCCATCTGAAATCTCTCAACTCCTTCTATATTCTATGTTGCCCTCTTCTTCAATCTTTGCCAGAAGCAGCTTTATCCAACTCTCTTTCTGTTCTCTACATTCTTGATTGCCCTTTACTGAAGCAGCGTTACCAAAGGGATGGAGAGCATTGGCGTAAAATTCAGCACATACCTTCTGTGATTATATCTTAG 2316 0.399 MKLESVGNNPSSCQLHPWWMNLAFVVERVPIISIVGMGGMGKTTLSQLVYNDQRVLEQFDLKAWVYVSQDFDVVAITRAILKQRLMGKRYFLVLDDVWNEDYSSWGVLQIPFIYGPSGSRILITTRNEKPLEKEDCWKLFSDVAFHDKDATKYPYLVSVGSKIVDKCGGLPLALKALGNILRVKFSQHEWVKFDRDQLIQLWMAEGLLNCCQINKSEEELGAEFFNDLVARSFFQQSRRRASCFTMHDLLNDLAKSVSGEFCSQISGSLEKIITKRARHISWSSKINIDDKFLEHISNCLLTELVDDIGNLKLLRYLDLSYTKIKRLPDSICRLHNLQTLILLWCYHLDELPIDLHKLVNLRHLDLRMSGINKMPNHIGRLKDLRTLTRTLSIFWLENVTDPADAMEANLKGKKHLDGLVLNWGNKFGRCNENEDSIIERQVLEALQPNEVIGPEFCGNDSSNIPFRSLEILKFEEMSAWKEWCSFEGHSEEGQGLSCLKEKLEICECQHLEDSVPKAVSIHEVKFRLCEKLFLKDLPSSLKKATIHGTCIIEACIHQILVNNPFLEELKIHNFHGPNKKWSSLDLHRQDSLVTLSITSWYSSSLPFALHLFSNLHSLLFHDCPYLESFPEGGLPSSLRKLEIEDCPKLVASREKWGLFKLHSLTDLRVSDDFENVESFPEDGLLPPTLNVLYLIGCSKLTNTNYMGLLHLKSLNSFYILCCPLLQSLPEAALSNSLSVLYILDCPLLKQRYQRDGEHWRKIQHIPSVIIS 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g02002 771 SUPERFAMILY L domain-like 236 763 - -
Vimu4g02002 771 PRINTS Disease resistance protein signature 167 181 - -
Vimu4g02002 771 PRINTS Disease resistance protein signature 31 46 - -
Vimu4g02002 771 PRINTS Disease resistance protein signature 309 325 - -
Vimu4g02002 771 Gene3D - 134 200 IPR042197 -
Vimu4g02002 771 Gene3D Ribonuclease Inhibitor 534 767 IPR032675 -
Vimu4g02002 771 PANTHER DISEASE RESISTANCE PROTEIN RP 22 192 IPR044974 GO:0006952
Vimu4g02002 771 Gene3D Ribonuclease Inhibitor 291 520 IPR032675 -
Vimu4g02002 771 Gene3D - 80 133 IPR027417 -
Vimu4g02002 771 SMART LRR_typ_2 358 381 IPR003591 -
Vimu4g02002 771 SMART LRR_typ_2 311 334 IPR003591 -
Vimu4g02002 771 Pfam NB-ARC domain 82 193 IPR002182 GO:0043531
Vimu4g02002 771 Gene3D - 18 79 IPR027417 -
Vimu4g02002 771 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 27 194 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g02002 Vimu-Chr4 22398101 22401144 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g02002 295 387 WRKY Transcription Factor Family AT4G12020 35.106 3.52e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g02002 - - mtr:11446754 611.683