Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01988 TCACCATGCCAGTGGTTGAGGGAGTTGAGATTGGAGTCTCAGGGATTAAATCCAATAAGCCTTCTTATTGACTGTGCCAAATGTGTTGCATCAGGAAGCATCAAGAATGCAGATATTGGCCTTGAGTACATATCTCAGATTTCATCTGCTGATGGTAATGCAGTGCAAAGAATGGTGAGTTATTTCAGTGAAGCACTTGGACACAGGATAATAAAACATCTGCCAGGTGTATACAAATCTATCAGCCCCTCAAAAACATCACTATCTTCAGACGATATCCTTGCTGAGAAATACTTCTACGAGTTGTGTCCCTTTTTGAAGTTCTCATACCTGATCACAAACCAAGCCATTGTGGAGGCAATGGAATGTGAAATGGTGGTTCACATCATTGATCTCCATTGTTGTGAGCCAGCTCAATGGATAGATCTTCTACTCACTTTCAAAAACCGTCGGGGAGGTCCACCCCATCTGAAAATTACAGGCATTAATGAGTCGAAGGAAGTGTTGGATCAGGTGAACTTTCATGTGACATCTGAAGCTGGGAAATATGATTTTCCTTTACAGTTCTACCCAGTTGTTAGCAAACTGGAAGATGTTGACTTTGAAAAGTTGCCTGTTAAGACTGGAGATGCTGTTGCAATAACTTCTGTTCTTCAGCTGCATTTGCTTCTTTCCACTGATGATGACATGGCTGGAAGAATCTCACCAGCAGTGGCAGCATCCATGAATCTGCAGAGAACAGTGCATATGGGCCAAAGGACTTTTGCGGAGTGGCTTGAGAGAGATATGATCAATGCATATATCTTGAGTCCTGATTCTGCATTGTCACCTCTTTCCTTTGGTGCCTCGCCTAAGATGGGGAATCTTCTGAAGGCCATGCGAAAGCTCAATCCAAAACTGGTGGTGGTCACTGAACAAGAATCAAATTTGAATGGATCAAATTTGATGGAGAGAGTTGATAGAGCATTGTACTTTTACAGTGCATTGTTTGATTGCTTGGACTCTACTGTAATGAGAACATCAGTTGAGAGGCAAAAACTTGAGAAGACGCTTTTTGGAGAGCAGATAAAAAATATCATTGCTTGTGAGGGAGTTGAGAGAAAGGAAAGACATGAGAAACTTGAAAAATGGATTCGAAGGCTTGAAATGGCTGGTTTTGTGAAAGTGCCATTGAGCTACAATGGGAGGATTGAAGCAAAGAATCTGTTGCAGAGATATAGTAGTAAATACAAATTTAGAGAAGAGAATGATTGTTTGTTTGTCTGCTGGAGCGATAGACCATTGATTGGCAATGTAGTGAGAACTAGAGAAGTTGCTTGGTGGTATACATTGTCTTTTGGGTGCCCAAGGACAAACTTATATGGACACAGAAGTGCTAGAAAATTTGCCATTTGGCCTTGTATCTTGTTCTTTCCAGTTGTCCTGATAAAGCTATCTCTTAATATATTAGATTCACCATACCCGTGGCTCAAAGATATGAATGGGGAAGATAGGAATAAATACCTGGCCCGTATTCTTAACGCATGTGCAAAGTTTATTGAATCAGGAAGCATCATGAATGCAGATACTGGACTGGACCACATTGCTCATATTGCCTCCCCTTATGGTGATGCAATGCAAAGGGTAGCCACCTATGTTAGTGAGGGTCTAGCCTTCCAAGTTCTGAAAAATTTGCAGGGAGTACCTAAAGCTGTCAATCTGTCAAAGACAATGTCAACCTCGGAAGAACAACTTGTTAAGAAGACATTCTATGACCTTTATCCATTTTTAAAGACTGCATACGTAATCACAAGTCATGCCATTGCTGAAGCTGTTGAAGGAGAAGAAGTGATCCATGTCATTGATCTCTGTGCATCTGATGCTGCTCAGTGGATTTATCTTATGCATAGATTAAAAGAAAGCCTGAAGAGCCCCCCACTTCTGAAAATCACAGGCATACATGAAAAGAAGGAAATTCTAGAGCAAGTGGACACTCAACTAAGAGTAGAAGCTAAAAGTTTGAACTTCAAACTCGAATTCAATGCTATTGTAAGCACTTTGGAGAATGTTGACCTTGAAGAATTGCCTGTGAAGAAAGGAGAGCCTCTTGCAATCAGCTCAGTGCTTCAGCTGCACACTCTTCTGGCCACTGATGATGCAGTGGTCTGCAACAGAAGCTCGAAGGAAGAACCAATGCATCAAAGGACATTTGCTGAGATGCTTGGGAAACAAAAGACCAACCTCAGTTCTGAATCATCGTTGATACAACTTTCTCTGTGTGCTACTTCAACCAAGATGATGGACTTTCTAAAGGGCCTGTGGAAACTCCAACCTAGAGTGATGGTGGTTACTGAACAAGAATCCAGTGGCAATGGTTCTTTGACAGAAAGGGTTGACAAAGCATTGGACTTTTACGGTGCATTGTTCAACTGTTTGGAATCAACTGTTTCAACAACACTAGTACAGAGAAACATCATGGAAAGGACTCTACTGGGGCAAGAAATAAAGAACATTGTTGCAGGTGAAGGAGTTGAGAGAAAGGAAAGACATGAAAAACTTGAGAATTGGACCCCAAAGCTAGAAATGGCCGGGTTTGGGAAGAGACATATTAGCCATCATTGGATCACGCAAGCAAGAAAACAGTTGCAAGGTTATGGAAATGGATACAGTTTTTGTCCCGAGAATAATTCTTTGTTTGTCTGCTGGAATGATAAACCTCTCTTTTCTGTGTCAGCCTGGACAGTTCAGAAGATGAATAACATGGTTATGTAA 2751 0.4133 SPCQWLRELRLESQGLNPISLLIDCAKCVASGSIKNADIGLEYISQISSADGNAVQRMVSYFSEALGHRIIKHLPGVYKSISPSKTSLSSDDILAEKYFYELCPFLKFSYLITNQAIVEAMECEMVVHIIDLHCCEPAQWIDLLLTFKNRRGGPPHLKITGINESKEVLDQVNFHVTSEAGKYDFPLQFYPVVSKLEDVDFEKLPVKTGDAVAITSVLQLHLLLSTDDDMAGRISPAVAASMNLQRTVHMGQRTFAEWLERDMINAYILSPDSALSPLSFGASPKMGNLLKAMRKLNPKLVVVTEQESNLNGSNLMERVDRALYFYSALFDCLDSTVMRTSVERQKLEKTLFGEQIKNIIACEGVERKERHEKLEKWIRRLEMAGFVKVPLSYNGRIEAKNLLQRYSSKYKFREENDCLFVCWSDRPLIGNVVRTREVAWWYTLSFGCPRTNLYGHRSARKFAIWPCILFFPVVLIKLSLNILDSPYPWLKDMNGEDRNKYLARILNACAKFIESGSIMNADTGLDHIAHIASPYGDAMQRVATYVSEGLAFQVLKNLQGVPKAVNLSKTMSTSEEQLVKKTFYDLYPFLKTAYVITSHAIAEAVEGEEVIHVIDLCASDAAQWIYLMHRLKESLKSPPLLKITGIHEKKEILEQVDTQLRVEAKSLNFKLEFNAIVSTLENVDLEELPVKKGEPLAISSVLQLHTLLATDDAVVCNRSSKEEPMHQRTFAEMLGKQKTNLSSESSLIQLSLCATSTKMMDFLKGLWKLQPRVMVVTEQESSGNGSLTERVDKALDFYGALFNCLESTVSTTLVQRNIMERTLLGQEIKNIVAGEGVERKERHEKLENWTPKLEMAGFGKRHISHHWITQARKQLQGYGNGYSFCPENNSLFVCWNDKPLFSVSAWTVQKMNNMVM 916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01988 916 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 15 429 IPR005202 -
Vimu4g01988 916 ProSiteProfiles GRAS family profile. 9 435 IPR005202 -
Vimu4g01988 916 Pfam GRAS domain family 19 429 IPR005202 -
Vimu4g01988 916 Pfam GRAS domain family 504 907 IPR005202 -
Vimu4g01988 916 ProSiteProfiles GRAS family profile. 493 907 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01988 Vimu-Chr4 22307619 22312526 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01988 466 910 GRAS Transcription Factor Family AT1G50420 42.151 1.65e-116 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vimu4g01988 GRAS 5.3e-111 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01988 - - vum:124842506 844.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g01988 4 22307619 22312526 Vimu4g01988 4 22307619 22312526 ECH