Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01972 ATGTATTGTAGGATCAAGTGGATGAAGTTCTGGCCCATTGAGAAGCACTTGCTCTCATCTTCAATGGACAAAACTGTGCGACTGTGGCATCTGTCTAACAAGTCTTGTTTGAAAATATTTTCACACAGTGACTATGTAACTTGCATCCAGTTTAATCCTGTTGATGATAGATACTTCATTAGTGGATCTTTGGATGCTAAGGTTCGCATATGGAGCATTCCTGATCGACAAGTTGTTGATTGGACAGATCTACATGAGATGGTCACTGCTGCTTGTTATACACCTGATGGCCAGGGTGCACTGGTTGGTTCATACAAGGGTAGCTGCCACTTATATAATACATCTGAAAATAAGTTGCAACAGAAGAGTCAGATCAATCTGCAAAACAAGAAAAAGAAATCACATCATAAGAAAATTACTGGTTTCCAGTTTGCCCCTGGAAGTTCATCAGAAGTACTTATCACATCTGCTGACTCAAGAATACGGGTGGTTGATGGTGTTGATCTGGTCCATAAGTTTAAAGGCTTTAGGAATGCAACTAGCCCAATTTCAGCATCCCTCACAGCAAATGGTAAATATGTTGTCGCAGCAAGTGAGGACTCTCATGTATACATCTGGAAAAATGAGGCTGATTGCAGGCCGAACAGAAACAAGGGTGTCACTGTCACACGATCATATGAACATTTTCACTGTAAAGATGTGTCAGTGGCCATTCCCTGGCCTGGTATGGGTGATGCATGGGACATGCATGATACATTTTCTGGAGAACAACCCGAGCTTGATAACAATGCTGATGAAGTCGCATCAGCCAATCATCCTCCTACCCCTGTAGAGGAAAACTTTGTCACTGAGGGTTCAAGATCTGGATCTGGTTACAACAACAGTCCACGCCATGCAACCATTGCAAGTGCCACAAATAGTTACTTTTTTGATAGAATTTCTGCAACATGGCCAGAGGAAAAACTTCTTCTGGCTGCAAGAAACCAAAGCCCTCGTGTGAGTATGGATTTCTCTAATGGGGCAAGTCAAAAAATGTCAGCCTGGGGTATGGTGATTGTAACTGCCGGCCTTCGAGGGGAAATTAGAACTTTCCAAAATTTTGGATTGCCACTTCGGATATAA 1122 0.4251 MYCRIKWMKFWPIEKHLLSSSMDKTVRLWHLSNKSCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPDRQVVDWTDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSQINLQNKKKKSHHKKITGFQFAPGSSSEVLITSADSRIRVVDGVDLVHKFKGFRNATSPISASLTANGKYVVAASEDSHVYIWKNEADCRPNRNKGVTVTRSYEHFHCKDVSVAIPWPGMGDAWDMHDTFSGEQPELDNNADEVASANHPPTPVEENFVTEGSRSGSGYNNSPRHATIASATNSYFFDRISATWPEEKLLLAARNQSPRVSMDFSNGASQKMSAWGMVIVTAGLRGEIRTFQNFGLPLRI 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01972 373 ProSiteProfiles Trp-Asp (WD) repeats profile. 39 73 IPR001680 GO:0005515
Vimu4g01972 373 PANTHER WD REPEAT DOMAIN 44 13 370 IPR040324 -
Vimu4g01972 373 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 39 73 - -
Vimu4g01972 373 SMART WD40_4 33 72 IPR001680 GO:0005515
Vimu4g01972 373 SMART WD40_4 1 30 IPR001680 GO:0005515
Vimu4g01972 373 SMART WD40_4 75 113 IPR001680 GO:0005515
Vimu4g01972 373 SMART WD40_4 166 207 IPR001680 GO:0005515
Vimu4g01972 373 SMART WD40_4 120 165 IPR001680 GO:0005515
Vimu4g01972 373 Gene3D - 3 230 IPR015943 GO:0005515
Vimu4g01972 373 Pfam WD domain, G-beta repeat 35 72 IPR001680 GO:0005515
Vimu4g01972 373 Pfam WD domain, G-beta repeat 170 207 IPR001680 GO:0005515
Vimu4g01972 373 SUPERFAMILY WD40 repeat-like 5 210 IPR036322 GO:0005515
Vimu4g01972 373 ProSiteProfiles Trp-Asp (WD) repeats profile. 17 39 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01972 Vimu-Chr4 22111616 22114985 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01972 4 204 U-box Gene Family AT2G33340 26.047 9.59e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01972 K20241 - gmx:100815065 716.457