Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01964 ATGCACCTACCGAACGACCACGACCGTATCGGAACCGATAAGGTCGACTGTCTGGACGCCTTTTTGTTCCAGACACGTGGTGAAGTCCAACAGGCGAGTAACTCAAGTGGGTCCCGCTCTCCAACAACAATTGAATTGCTTTCGAAAATGGGAGTTCCAGAGAAAGACCCTCTTGCCCAGTTGAGTCTACCCCCTGGTTTTCGGTTCTACCCCACCGACGAGGAGCTTCTCGTTCAGTATCTCTGCCGCAAGGTCGCCGGCCACCATTTCTCTCTCCCAATCATTGCTGAAATTGATTTGTACAAGTTCGACCCATGGGTTCTCCCGAGCAAGGCGATCTTCGGGGAGAAAGAATGGTACTTTTTCAGCCCTCGAGACAGGAAGTACCCAAACGGGTCTCGACCCAACAGAGTAGCCGGGTCGGGGTATTGGAAAGCCACCGGAACCGACAAGATCATCACCACCGAGGGTAGAAAAGTTGGCATAAAAAAAGCTCTGGTCTTTTACGTTGGCAAAGCTCCCAAAGGCACCAAAACCAATTGGATCATGCACGAGTATCGCCTCCTTGACTCTTCCCGAAAGACAACCGGAACCAAGTTGGACGATTGGGTTCTGTGTCGTATATACAAGAAGAACTCGAGTGCACAGAAGGCAGCGCAGAACGGCGTCGTTTCGAGCAGGGAACACACTCAATACAGCAACGGTTCGTCGTCATCGTCTTCGTCCCATCTGGACGACGTTCTGGAATCGCTGCCGACTATCGACGAACGATGTTTCGCGATGCCACGTGTGAGTACGATGCAGGCACAGCACGAGGAGAAGGTGAGCATTCATCAGAACCTGGGTGCGGGTGGGTTGGTGGATTGGGCGAATCCAGCGGTTCTGAATTCGGTGGGTGATTTCGTTTCGGGGAATAATCAAGTGGTGCAGGAGGAGACACAGGGGATGGTGAACTACGGCGGGTGCAATGACCTTTATGTCCCCACGTTCTGCCACGTGGAGTCTACGCTTCCGCAAAAGATGGAGGAAGAGGTGCAAAGCGGTGTGAGAAACCAAAACAACAATAACCCGTGGTTTGTTCAGAACGAATTTACGCAGGGGTATCAGAACCCGGTGGACACGTGTGGGTTTAAGTTCCCGGTTCAGGCGGTGGGATTCGGGTTCAGGCAATGA 1173 0.526 MHLPNDHDRIGTDKVDCLDAFLFQTRGEVQQASNSSGSRSPTTIELLSKMGVPEKDPLAQLSLPPGFRFYPTDEELLVQYLCRKVAGHHFSLPIIAEIDLYKFDPWVLPSKAIFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIITTEGRKVGIKKALVFYVGKAPKGTKTNWIMHEYRLLDSSRKTTGTKLDDWVLCRIYKKNSSAQKAAQNGVVSSREHTQYSNGSSSSSSSHLDDVLESLPTIDERCFAMPRVSTMQAQHEEKVSIHQNLGAGGLVDWANPAVLNSVGDFVSGNNQVVQEETQGMVNYGGCNDLYVPTFCHVESTLPQKMEEEVQSGVRNQNNNNPWFVQNEFTQGYQNPVDTCGFKFPVQAVGFGFRQ 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01964 390 MobiDBLite consensus disorder prediction 217 246 - -
Vimu4g01964 390 ProSiteProfiles NAC domain profile. 63 211 IPR003441 GO:0003677|GO:0006355
Vimu4g01964 390 FunFam NAC domain-containing protein 72-like 72 216 - -
Vimu4g01964 390 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 62 269 - -
Vimu4g01964 390 SUPERFAMILY NAC domain 58 211 IPR036093 GO:0003677|GO:0006355
Vimu4g01964 390 Gene3D NAC domain 72 217 IPR036093 GO:0003677|GO:0006355
Vimu4g01964 390 Pfam No apical meristem (NAM) protein 64 188 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01964 Vimu-Chr4 21929413 21931014 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01964 50 325 NAC Transcription Factor Family AT3G15500 62.414 4.74e-120 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vimu4g01964 NAM 8.7e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01964 - - gmx:100170718 613.994