Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01963 ATGGAGAGCACCGACTCTTCCACCGGTTCACAACACCAGCCGCAATTGCCACCTGGCTTCCGCTTCCACCCCACCGACGAGGAGCTCGTCGTTCACTACCTCAAGAAAAAAGCAGCTTCCGTTCCTCTTCCCGTCGCCATAATCGCTGAGGTTGATCTCTACAAGTTCGATCCATGGGAGCTACCCGGTAATTGCAATTCATCCAAGGAATACAAAGACTCACACTTTACGTTCAAAACCGAAATGGCTAAGGCCACGTTTGGGGAGCAGGAGTGGTACTTCTTTAGTCCGAGGGACAGGAAGTATCCGAACGGTGCGAGGCCAAACAGGGCGGCCACTTCTGGGTATTGGAAGGCCACTGGAACCGATAAGCCTGTGTTAACCTCTGGGGGAACCCAGAAGGTTGGAGTGAAAAAGGCTTTGGTTTTCTATGGAGGGAAGCCCCCAAGAGGAATCAAAACTAATTGGATCATGCATGAATATAGGCTTGCTGATAACAAGCCTAACAATAGGCCTCCTGGCTGTGACTTGGGCAACAAGAAAAACTCTCTAAGGCTTGATGATTGGGTGCTGTGCCGAATCTACAAGAAGAGCAACACGCACAGGTCTCCGATGGAGCATGACAGGGAAGATTCAATGGAAGAGATGATTGGAGGGATTCCTCCTTCGATCAACGTGGGTCACATGAGTGGGAGGTATCATCATCACCATCATCATCATCTTTCAAAGATGTCCACAGGCTACAGCAGTGCATTGCTGGAAAATGACCAAAACCTGTTGGAAGGGATGATGATAGGTAACGGATCAGTGATGAACACAAGTACGACTGGTACTACACCTGGTGGCATGGGGGCCTCAAACTCAAAGGCAGAGCTTTCTTTTGTGCCAACCATGACTCACTCTTCCAACACTTGTAAAAGAACACTGTCGTCGCTGTATTGGAATGATGAGGATTTGGCTGGCACCTCATCATCCAACAAGAGGTTGAATTTGGAAAGTGGGGACAACAATCACGGAAGTGTTGTGAGAACTGATCAAGATAATGGCACTGCCACCTCAATTGTCACTCTGCTTAACCAGCTCCCTCAAACCCCTTCGTTGCACCAGCAATCTATGTTGGGTTCCATAGGCGATGGACTTCTTAGGACAACATATCAAATACCAGGAATGAATTGGTATGCTTAG 1185 0.4852 MESTDSSTGSQHQPQLPPGFRFHPTDEELVVHYLKKKAASVPLPVAIIAEVDLYKFDPWELPGNCNSSKEYKDSHFTFKTEMAKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPVLTSGGTQKVGVKKALVFYGGKPPRGIKTNWIMHEYRLADNKPNNRPPGCDLGNKKNSLRLDDWVLCRIYKKSNTHRSPMEHDREDSMEEMIGGIPPSINVGHMSGRYHHHHHHHLSKMSTGYSSALLENDQNLLEGMMIGNGSVMNTSTTGTTPGGMGASNSKAELSFVPTMTHSSNTCKRTLSSLYWNDEDLAGTSSSNKRLNLESGDNNHGSVVRTDQDNGTATSIVTLLNQLPQTPSLHQQSMLGSIGDGLLRTTYQIPGMNWYA 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01963 394 MobiDBLite consensus disorder prediction 1 21 - -
Vimu4g01963 394 SUPERFAMILY NAC domain 10 197 IPR036093 GO:0003677|GO:0006355
Vimu4g01963 394 MobiDBLite consensus disorder prediction 1 15 - -
Vimu4g01963 394 PANTHER NAC TRANSCRIPTION FACTOR 56 16 243 - -
Vimu4g01963 394 FunFam NAC domain-containing protein 72-like 25 202 - -
Vimu4g01963 394 ProSiteProfiles NAC domain profile. 16 197 IPR003441 GO:0003677|GO:0006355
Vimu4g01963 394 MobiDBLite consensus disorder prediction 323 347 - -
Vimu4g01963 394 Gene3D NAC domain 25 202 IPR036093 GO:0003677|GO:0006355
Vimu4g01963 394 Pfam No apical meristem (NAM) protein 17 163 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01963 Vimu-Chr4 21881022 21882660 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01963 1 394 NAC Transcription Factor Family AT3G15510 50.852 2.74e-123 359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vimu4g01963 NAM 2.5e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01963 - - vra:106763825 724.931