Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01955 ATGGGGGATGCAAATGTGGCCAATTCAAATTTCAACATCACTTGGGTCTTTACTGTGGATCCAAACTTCTCCTATTTCATTCGGGTGCACTTTTGTGATATTTTTAGCAAGTCTCTCAACACTCTAGTGTTCAATTTGTTCATCAATACTGACATAGCTCTTGGAAGCGTTGACCTCTCATCCCTAACTAATGATTTGTCTGTGCCTTACTATAAGGACTTTGTTTCCAATGCCTCAGCAGACTCCAATATTTTGACAGTGAGTGTTGGTCCTGATACAATGGCAGATATCACAAATGCCACTATGAATGGATTGGAGGTTATAAAGATCATTGAGAGTCTCCTTCCCAGTTCATCATCAAGTAAAAGCAAGATGGGGATAATAGTAGGTTCTTCTATTGGAGTTGTGGCTGCCATAGCTTTGCTTGGTTTGTGTTACTGCTGCATGGTGAGATATAAATCAAAGTCTACTGAACAGGGTCATTCTTGGTTGCCTTTACCCTTGTATGGAAACTCTCAGACCATGACAAAAATGTCAACAACGTCTCAGAAGAGTGCAACTGCAAGCTGCGTTTCTTTAGCTTCATCAAATCTCGGACGGATCTTCACTGTCCAAGAGATCCTCGATGCAACCAACAAGTTTGATGAGAAGCTGCTTCTTGGTGTTGGTGGCTTTGGAAGGGTTTATAAAGGAACACTTGAAGATGGGACCAATGTCGCTGTTAAAAGGGGGAACCCCAGATCGGAACAAGGTCTTGCCGAATTCAGAACAGAAATTGAGATGTTATCCAAGCTTCGCCATCGCCACCTTGTGTCCCTCATTGGCTATTGTGACCTACCACCACTGTCATGGAAGCAACGGCTTGAAATTTGCATTGGAGCAGCAAGAGGTCTTCATTATCTCCACACGGGAGCATCTCTAAGCATAATTCATCGAGATGTAAAGACAACTAACATCCTCTTAGATGATAACTTTGTTGCCAAGGTTGCTGACTTTGGCCTCTCCAAAACTGGTCCTGCTCTTGATCAGACTCATGTGAGCACTGCTGTCAAAGGTAGTTTCGGTTATCTTGATCCTGAATACTTCAGAAGGCAACAGCTTACAGAGAAATCAGATGTGTATTCATTTGGAGTAGTTTTGATGGAAGTGTTGTGCACAAGACCAGCCTTGAATCCTGTCCTTCCTAGGGAGCAGGTTAACATAGCTGAGTGGGCAATGACATGGCAGAAGAAAGGAATGCTTGACCAAATCATGGATCAGAATCTAGTGGGGAAAGTAAATCCTGCTTCTCTGAAGAAGTTTGGGGAAACAGCTGAGAAGTGCTTGGCCGAGTATGGAGTGGATAGGCCTTCTATGGGTGATGTTTTGTGGAATCTTGAATATGCTTTGCAGCTTCAAGAAACCTCATCATCGCTCATGGAGCCTGAAGATAACAGCACAAACCACATCACTGGAATTCAGTTGACTCGTCTTGAGCCTTTTGACAACAGTGTTAATATGATTGATGGGGGCAACTCTTTCACAGATGATGATGCAGAAGATGCTGCCACAAGTGCAGTGTTCTCACAATTGGTAAATCCTCGTGGAAGATGA 1593 0.4331 MGDANVANSNFNITWVFTVDPNFSYFIRVHFCDIFSKSLNTLVFNLFINTDIALGSVDLSSLTNDLSVPYYKDFVSNASADSNILTVSVGPDTMADITNATMNGLEVIKIIESLLPSSSSSKSKMGIIVGSSIGVVAAIALLGLCYCCMVRYKSKSTEQGHSWLPLPLYGNSQTMTKMSTTSQKSATASCVSLASSNLGRIFTVQEILDATNKFDEKLLLGVGGFGRVYKGTLEDGTNVAVKRGNPRSEQGLAEFRTEIEMLSKLRHRHLVSLIGYCDLPPLSWKQRLEICIGAARGLHYLHTGASLSIIHRDVKTTNILLDDNFVAKVADFGLSKTGPALDQTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLMEVLCTRPALNPVLPREQVNIAEWAMTWQKKGMLDQIMDQNLVGKVNPASLKKFGETAEKCLAEYGVDRPSMGDVLWNLEYALQLQETSSSLMEPEDNSTNHITGIQLTRLEPFDNSVNMIDGGNSFTDDDAEDAATSAVFSQLVNPRGR 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01955 530 SMART serkin_6 214 462 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g01955 530 Gene3D Phosphorylase Kinase; domain 1 172 278 - -
Vimu4g01955 530 Pfam Malectin-like domain 7 109 IPR024788 -
Vimu4g01955 530 SUPERFAMILY Protein kinase-like (PK-like) 192 460 IPR011009 -
Vimu4g01955 530 Gene3D - 3 111 - -
Vimu4g01955 530 FunFam receptor-like protein kinase FERONIA 175 280 - -
Vimu4g01955 530 PANTHER OS07G0166700 PROTEIN 200 466 IPR045272 GO:0004714|GO:0006468
Vimu4g01955 530 FunFam Receptor-like protein kinase FERONIA 265 481 - -
Vimu4g01955 530 ProSitePatterns Serine/Threonine protein kinases active-site signature. 309 321 IPR008271 GO:0004672|GO:0006468
Vimu4g01955 530 ProSitePatterns Protein kinases ATP-binding region signature. 220 242 IPR017441 GO:0005524
Vimu4g01955 530 Pfam Protein tyrosine and serine/threonine kinase 281 455 IPR001245 GO:0004672|GO:0006468
Vimu4g01955 530 Pfam Protein tyrosine and serine/threonine kinase 219 277 IPR001245 GO:0004672|GO:0006468
Vimu4g01955 530 ProSiteProfiles Protein kinase domain profile. 214 462 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g01955 530 Gene3D Transferase(Phosphotransferase) domain 1 279 466 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01955 Vimu-Chr4 21727281 21728984 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01955 1 530 Receptor kinase-like Gene Family AT3G46290 56.021 0.0 602
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vimu4g01955 PK_Tyr_Ser-Thr 4.9e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01955 - - gmx:100809700 884.404