Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01942 ATGGTTGGATTCCAGAGTGACCATAAGCCCGGGAACAAGTACAATGGTAATTCTAATATTATTCCGGATCGTGTTGAACGTCTTATGAGACGAAGAGAGCTTTTTAAAAGCAGCAAGGCATCTCTTTTGAATGAGGCTCCTGATAGTAATAATAATAATAATAATGTGATTACTGAATATTTTGAGCATGACCCGCGCTTAAGGGAAGATAATAACTCTGCTGCTTCCTATGAACGATTACTGGAAGGAGTGGCGGCGGCAGTACGGGGCGAGAGGGAGGATGGGAGACCTTTCAAACAAAGGCTTTTGGTGGTGGCCAATAGGCTGCCAGTCTCGGCAATTAGGAAAGGCGAGGATTCGTGGTCCTTGGAGATAAGTGCTGGTGGCCTGGTGAGCGCTCTGTTAGGTGTGAAGGCTTTGGAGGCAAGGTGGATAGGTTGGGCTGGAGTCAATGTGCCAGATGAGATTGGACAAAAGGCACTTACTAAAGCTTTGGCTGAAAAGAGGTGTATCCCAGTATTTCTTGATGAAGAGATTGTTCATCAATATTATAATGGCTATTGCAACAATATTCTATGGCCTCTTTTTCATTACCTTGGACTTCCACAAGAAGACCGCCTTGCTACCACACGTAGTTTCCAATCTCAATTTGAAGCATACCAGAAGGCAAATCAAATGTTTGCCGATGTTGTAAACAAGCACTATGAAGAGGGTGATGTCGTTTGGTGCCATGATTACCATCTTATGTTTCTTCCACAATGCTTAAAGAATTATAACCCCAAAATGAAAGTTGGCTGGTTTCTTCATACCCCATTTCCATCTTCTGAGATTCACAGGACATTGCCTTCTCGTTCAGAGCTTCTGCATGCTGTTCTTGCAGCTGATTTGGTTGGTTTTCACACCTACGACTATGCACGACATTTTGTCAGTGCATGTACCCGCATACTTGGACTTGAGGGTACGCCTGAAGGGGTTGAGAATCAAGGGAAGCTGACTCGAGTAGCAGCATTTCCAATAGGTATAGACTCAGAACGATTCATACGTGCACTTGACCTTCCTCAAGTGAAGGGTCACATAAAAGAATTACAAGAGAGATTTAAAGGGAGAAAGGTAATGTTAGGTGTTGATCGTCTTGATATGATCAAAGGAATCCCTCAAAAAATTCTGGCATTTGAAAAATTTTTGGAAGAGAGTCCTGATTGGCATCAAAAGCTTACAAGCCAGGTCCATGAAATTGTTGGTCGCATCAATGGCAGATTTGGAACACTTGCTACCGTTCCCATACATCACCTGGACTGCTCTCTTGATTTTCATAAACTATGTGCTTTGTACGCTGTTACGGATGTAGCACTTGTCACCTCTTTAAGGGATGGAATGAATCTTGTAAGTTACGAATTTGTGGCCTGCCAAGATAAAAAGAAAGGGGTTCTCATTCTCAGCGAATTTGCTGGTGCTGCACAGTCACTTGGCGCTGGGGCAATTCTGGTCAACCCTTGGAACATCACAGAAGTTGCTGCTGCAATTGCCAAGGCTCTGAATATGAAATCAGAAGAACGAGAGAAGAGACATAAGCATAACTTTAAACATGTAACAACCCACACTGCTCAGGAATGGGCAGAAACTTTTGTGAGTGAACTAAATGATACTATTGATGAGGCACAACTAAGGACCAAACAAGTCCCACCAAGGCTCCCAACGGAGACTGCAGTTGAGCGTTATCTGCAGTCAAATAATCGGTTGATTATTTTGGGTTTCAATGGAACTCTAACTGTACCAGTTGAGAGAAAAGGTGATCAGTATCAAGAAACGGAACTTACAGTTCATCCAGAACTGAAACAACCCTTGGCAGAACTTTGCAGTGACCCAAAGACCACAGTTGTTGTGCTTAGTGGAAGTGGTAGACCAGTTCTAGATCAAAACTTCAAAGAGTATGACATCTGGCTAGCAGCAGAGAATGGAATGTTTTTAAACCCTTCTAAGGGAGAATGGATGACAACAATGCCAGAGCAACTAAATATGGAATGGGTTGACAGTGTGAAGCATGTTTTTGACTACTTCACAGATAGAACACCTCGATCACATTTTGAAGAAAGGGAAGCTTCACTTGTATGGAGTTACAGACATTCAGATGTTGAGTTTGGAAGACTGCAAGCAAGGGACATGCTGCAGCATCTCTGGACAGGGCCAATTTCTAATGCTTCAGTTGAAGTTGTTCAAGGGAGCCGGTCTGTTGAGGTGCGAGCTGCTAATGTTACTAAGGGAGCAGCCATTGACCGTATTCTAGGGGAGATAGTCCACAGTAAATCCATGACAACACCAATTGATTATGTTTTGTGTATAGGACATTTTCTAACAAAGGATGAAGATATATATGCGTTTTTTGAGCCAGAGTTACCTTCTATTGGTGTGGGTCTTCCACGAAGTAAGGTAACAGAAGGAGTTAAGTTTCCTGCGGAGAGGATATCATCGTTGAAGATTCCAGCAAGTAAAAATGGAGCAGCAAAATCATCCCAAAATAAGGGACGTGCTGTGCCAAATTCTGAGAGGAAAACAAATAATCATGTGTGCCGTGCGCCACGTCGTCCAGCTCCTGAAAAGATCTCTTGGAATGTCCTTGACCTGAAGAAAGAGAATTACTTTTCTTGTGCTGTTGGAAGAACACAAACGAATGCTCGGTATACGCTTGGATCACCGGATGAAGTTGTTGCATTTCTAAAGGAACTAGTCAACGCATCTCCATACTCTTATGTCTGA 2754 0.4299 MVGFQSDHKPGNKYNGNSNIIPDRVERLMRRRELFKSSKASLLNEAPDSNNNNNNVITEYFEHDPRLREDNNSAASYERLLEGVAAAVRGEREDGRPFKQRLLVVANRLPVSAIRKGEDSWSLEISAGGLVSALLGVKALEARWIGWAGVNVPDEIGQKALTKALAEKRCIPVFLDEEIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQFEAYQKANQMFADVVNKHYEEGDVVWCHDYHLMFLPQCLKNYNPKMKVGWFLHTPFPSSEIHRTLPSRSELLHAVLAADLVGFHTYDYARHFVSACTRILGLEGTPEGVENQGKLTRVAAFPIGIDSERFIRALDLPQVKGHIKELQERFKGRKVMLGVDRLDMIKGIPQKILAFEKFLEESPDWHQKLTSQVHEIVGRINGRFGTLATVPIHHLDCSLDFHKLCALYAVTDVALVTSLRDGMNLVSYEFVACQDKKKGVLILSEFAGAAQSLGAGAILVNPWNITEVAAAIAKALNMKSEEREKRHKHNFKHVTTHTAQEWAETFVSELNDTIDEAQLRTKQVPPRLPTETAVERYLQSNNRLIILGFNGTLTVPVERKGDQYQETELTVHPELKQPLAELCSDPKTTVVVLSGSGRPVLDQNFKEYDIWLAAENGMFLNPSKGEWMTTMPEQLNMEWVDSVKHVFDYFTDRTPRSHFEEREASLVWSYRHSDVEFGRLQARDMLQHLWTGPISNASVEVVQGSRSVEVRAANVTKGAAIDRILGEIVHSKSMTTPIDYVLCIGHFLTKDEDIYAFFEPELPSIGVGLPRSKVTEGVKFPAERISSLKIPASKNGAAKSSQNKGRAVPNSERKTNNHVCRAPRRPAPEKISWNVLDLKKENYFSCAVGRTQTNARYTLGSPDEVVAFLKELVNASPYSYV 917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01942 917 CDD GT20_TPS 101 547 IPR001830 GO:0003824|GO:0005992
Vimu4g01942 917 Gene3D Glycogen Phosphorylase B; 348 531 - -
Vimu4g01942 917 Gene3D Glycogen Phosphorylase B; 93 347 - -
Vimu4g01942 917 CDD HAD_TPP 580 811 - -
Vimu4g01942 917 MobiDBLite consensus disorder prediction 829 852 - -
Vimu4g01942 917 Gene3D - 669 749 - -
Vimu4g01942 917 Pfam Glycosyltransferase family 20 101 547 IPR001830 GO:0003824|GO:0005992
Vimu4g01942 917 NCBIfam trehalose-phosphatase 578 793 IPR003337 GO:0003824|GO:0005992
Vimu4g01942 917 NCBIfam alpha,alpha-trehalose-phosphate synthase (UDP-forming) 101 547 IPR012766 GO:0003825|GO:0005992
Vimu4g01942 917 SUPERFAMILY HAD-like 579 909 IPR036412 -
Vimu4g01942 917 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 669 749 - -
Vimu4g01942 917 Pfam Trehalose-phosphatase 602 806 IPR003337 GO:0003824|GO:0005992
Vimu4g01942 917 MobiDBLite consensus disorder prediction 829 859 - -
Vimu4g01942 917 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 100 550 - -
Vimu4g01942 917 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 93 909 IPR001830 GO:0003824|GO:0005992
Vimu4g01942 917 Gene3D - 583 806 IPR023214 -
Vimu4g01942 917 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 93 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01942 Vimu-Chr4 21554186 21565096 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01942 10 912 Trehalose Biosynthesis Gene Families AT1G78580 72.967 0.0 1384
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01942 K16055 - gmx:100789554 1630.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g01942 4 21554186 21565096 Vimu4g01942 4 21554186 21565096 ECH